Gene Dred_1006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_1006 
Symbol 
ID4955676 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand+ 
Start bp1077716 
End bp1078375 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content38% 
IMG OID640180176 
ProductCRISPR-associated Cas4 family protein 
Protein accessionYP_001112366 
Protein GI134298870 
COG category[L] Replication, recombination and repair 
COG ID[COG1468] RecB family exonuclease 
TIGRFAM ID[TIGR00372] CRISPR-associated protein Cas4 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAAAC TTTATGAAGA AGATGATCTA TTAGCATTGT CTGGAATTCA GCATTTTGCC 
TTTTGTGAAA GACAGTGGGG GCTTATTCAT GTAGAAAGTC AGTGGGTTGA GAATGTAAAA 
ACAGTTGAAG GGAAAAATAT GCATAAAAGA GTTGATGACC CCTATTTTAC GGAAACGCGT 
GGTGACGTAA AGATTGTGAG GTCAGTTCCT CTTATGTCCA AAACCCTTGG TCTGTATGGT 
GTGGCAGATG TAATTGAAAT TCAGCAACAT GATGACAACT TCGGTATCGT AAATTACAGC 
ATTGTTGAAT ATAAACGAGG AAAGCCCAAA GCAGATGACA GGGACCAGGT TCAATTGTGT 
GCTCAGGCCC TTTGCCTTGA AGAAATGCTC GCCATTACTA TTAATTATGG ATACCTTTTC 
TATGGTGAGA CGAAACACAG ATACAGAGTT GAGTTTAATA ATTGTTTAAG GACTAGAGTT 
CAAGAACTTG CGCAAAGAAT GCATCTACTG TTTGAAAAAG GGCAAACTCC ACCAGCAGTA 
TATAATAAGA AATGTAAAAA TTGTTCCTTG TTTGACATAT GTGTTCCAGA ACTCTCCAAG 
GTAAACAAAA GAACACAAAA ATATCTAAGC CGAGTGTTTG ATGATATGAG GATTGAATAG
 
Protein sequence
MEKLYEEDDL LALSGIQHFA FCERQWGLIH VESQWVENVK TVEGKNMHKR VDDPYFTETR 
GDVKIVRSVP LMSKTLGLYG VADVIEIQQH DDNFGIVNYS IVEYKRGKPK ADDRDQVQLC 
AQALCLEEML AITINYGYLF YGETKHRYRV EFNNCLRTRV QELAQRMHLL FEKGQTPPAV 
YNKKCKNCSL FDICVPELSK VNKRTQKYLS RVFDDMRIE