Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dred_0998 |
Symbol | |
ID | 4956141 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfotomaculum reducens MI-1 |
Kingdom | Bacteria |
Replicon accession | NC_009253 |
Strand | + |
Start bp | 1052225 |
End bp | 1059901 |
Gene Length | 7677 bp |
Protein Length | 2558 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640180168 |
Product | YD repeat-containing protein |
Protein accession | YP_001112358 |
Protein GI | 134298862 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGAAATA AAATAAAGAG TTTTACAAAC CAAAAAGATA AAAGCAAAAT ATCCTTCACC GAACTGTCTC TGCCCAAAGG GGGAGGAGCC ATTAAAGGAA TTGGTGAAAC CTTTCAGCCT GACCCTTTCT CTGGTACTGC CAACCTTTCC ATCCCTGTTC AAATGTCACC CTGCCGTGAT TTCGAGCCGA AAATAAGTCT AAATTATAAT TCGGGGACAG GCAATGGCAT TTTCGGAATC GGTTTCTCTA TTTCCATTCC CAACATTTCA AGGAAAACCG AAAAAGGAAT TCCAAGGTAT AACGACACAG ATACTTTTCT TTTCTCAAAC GCCGAGGATC TTGTATCTAA AATGGTAAAG AACCAAGAGG GAAGCTGGGT CAAGGAAGAA AGACATGTGG AAGAAAACAG AGTCGGTTGG AAAGTTCTCT CATACATACC TAGAATTGAG GGACTGTTTG CCCAAATAGA ATACTGGCAG AATTCCTGGG AATCATTTTG GAAGGTAACC ACCAAGGACA ATACAACCTC CATTTATGGG CAAAGCGAAA ATGCAAGAAT AGCAGACCCT CACGACAATA CTCGCGTTTT TAAATGGCTT ATCGAAAAAA CCTACGATGC CAAAGGAAAT AAGATAGAGT ATTTTTACAA ACAGGAAGAT AATGAAAATG CGCCGGACAA TATCTGTGAA AAGAACCGGA CATACGCAAC AAATAAATAT GTAAGCAGCA TTAAATACGG CAACTATTTG GATGGCAAAG GTGAGGAAGC CTGGGCATTC GAAGTGGTTT TCGATTATGG ACAATACGAT ATTTCAGACC AATACTTAAG CCAGCCCGGT TGCAACCCTT ACATTCCTGC CAGGAAGTGG CCTGCCAGGC AAGACCCCTT TTCCTCTTAC CGAAGCGGGT TTGAAATACG TACCTTGCGT TTGTGTCGGA ATATTCTAAT GTTCCACCAT TTTAAAAAAG AATTGGGAGA AACACCCTGT CTAGTCAAGG CCACCCAACT GACATATAGG GAACCAGCGC AACAGTTACA GAATAGTAAC AACCCTTTTA CCAAAATACT TCAGCTTTCC CAGGTAGAAT TGAAGGGTTT CAAAAGGAAA GAAAACGGCA GTTATCAATT TAGATCCATG CCGTCGCTTA AGCTTACCTA TTCATGCCTG ATGCCGGCAG GTGGAAAATT CGATACTTTG AAAGTTGGGA ACAGTACGGC CGTGCCCGTA AGTACAGGGC AAATACGTTA TAATTTTGTA GACCTTTATG GAGACGGCAT CCCAGGCCTT TTATACAGCG ACGATAAGGC CACGTTGTAT TGGAAGCCCA AAGGTAATGG TGAATATGAG TATCCCGAAC CAGCTGCACA ATTTCCCATT GAAAAGGATT TAAAAAAAGG CGAATACACC TTGGTGAGCC TTGAGGGCAA TGGCAGGCTT GACCTGGTGG TGGGTACCCC GCAAAGGGGC GGCTTTTATG AAGGTAATCC CGATGGTTCT TGGCATTCTT ACCGAGATTT CGCAACCTAT CCCCTGGATT TCACTAATTC CCATAAAGAG ATGATCGATA TGAACGGAGA TGGTCTGGCA GATCTCTTGC TTTACGAGGA TAATACCGCA AAGATTTATC CTTCATTGAA GAAAAAGGGT TACGGTATTC CTACAAGGGC CAGTCTGTCA GAGGATTATC CCACAACAAG CAACGGATAT GCAGAAGAAG TCTTAAGTTA TGCCGATATG TTTGGCGACG GCATGGCGCA CCGAGTAAGA ATCCGTAACG GCAGCGTTGA GTGCTGGCCC AATCTTGGGC ACGGACGCTT TGGTAAAAGG GTATTGTTTG CAAATGCACC GCGTTTTGGG GATACTCTGG ACGCTTCACG CCTGTTTCTT GCAGACTTGG ACGGTACCGG TATGACAGAT CTCATTTATG CTTATCCAGA TAAAGTTCAG GTTTTTTTTA ACCAGGGCGG CAACAGTTTT AGTCCCCCCC TATCCATACC TCTGCCTGAA ACATATAGCA ATCTGGACCA GCTCGGTTTT GCCGACGTGA AAGGTAATGG GACTGCCTGC CTGGTTTTTA TTAAAACAGG CGCCAATGCA AAGCAATACT ATTATGATTT TTCTGAAGGA ACAAAGCCCT ACCTTTTAAC CGGCATTGAT AACAATCTGG GGGCGTTAAC AAACATAAAA TATACCAGCT CGGTAAAGTA TTATCTGCAT GATAAAATGG CGGGCAAGCC ATGGAAAACC AAACTTCCTT TTCCCGTCCA GGTGGTGGAA AAAGTAGAAA GCATAGACAA AATTTCTGGT CTAAAGCTAA CAACCCAATA CAAATACCAT GACGGCTTCT ACGATTCTGT GGAAAGGGAA TTCCGAGGCT TTGGCTTTGT GGAGGAAACG GATAGCGAGG ATTTCTTTAC TTATGCGAAA CCCGGTCTAC TTGAGAACGT TGCATTTTAT GGCCTAGAAG AGGAACACCA TGTGCCGCCT GTCCTGACAA AAAGGTGGTA TCATATCGGA GCCTGCATTG AAGAAGGGGT TGTGTCAAAA CAGTGTGAAA AAGAATATTA CCAGCAGGAT AAAAGGGGCT TTTCAATACC CGATAGTACC TTTGATGATG TTGTCCGACA AGGTTGCGCC GAAACCCTAA GGCAAGCTTA CAGGGCACTG AAGGGCCAGG TTATTCGAGA GGAGGTATAT GCCCTTGATT ATATTGAGGG TCGGACGGGC CATCCCTATA CAGTAACCGA AACAAATTTT CATGTAAGGC TAATACAGCC ATTAATAGGT GAGAATAGGG CAGTGTTTTC TGTTTATAAA AAGGAAACGG TTAGCTTTAA TTATGAGCGT AATCCTAACG ACCCGCAGAT ACAGCACGAA TTTATTCTTG CTGTGGATGA CTTTGGTAAT GTAAAAAAGT CCTGTCGTGT GTTTTATCCC AGGCGCGCCA CCCCCAAGGA CGCAGTTTCG GTAGTTCATC CAGAACAAAC CAAAATCAAA GCAATTGTGG ATTTGCACTC TTTTATTAAC AACAGTTTGG ATTTTTGGTT GTTAGGCATT TCCTACGAAA GCAAAACACT GGAAATTGGC GCTTTGGATC TACAGGGACA AGCTTGTTTT AGCTTTACAA AAATAAAAGA CCAGGTTGGC CGGGCCTTGC AAAACTGTAT TAGAAACGAT GAGAAGTTTT CTAGTGACAA AGTACAGGCC AGACTGCTTT CCTGGGAAAG AAATTATTTC TGGAATGAAG CCCAGGATGC ACCTCTCCCC CTTGGGCAAA TTACAGACAA GGCATTGTTG CATCACTCTG AAGAAGCGGT ATTCTCTCAG GAACTGCTAA ACACAGTATT TAATGGCAAA GCGACCATTG ATATGCTGGA AAAGGAAGGA GGGTACGCCT TTCAAGAGGG ATATTGGTGG AACAGGGGTC TGGTCCAGCA TTATTTGAAG GACAGATTCT TGTTGCCGTG GAAAACAGAA AATTCTTACA CTTCTTTCCC TTCATCCCTG TATGCTAAAG CAGTTTATGA ATACGACCAG TATAGCCTTG CTCCTGTTAA AGCAACCAAG TTTATTACTG ATAAAATAAC AAATACTTCC AGTGCTTTGC TCGACTATAC CATACTATTG CCCGTACAAA TCACAGATAT CAACGATAAC GTCTCCCAGG CTTTTTTTGA TCCTTTGGGT ATGGTTATCG CCACATCTGT TTTTGGTACA ATGGGCGGTA AACCAGCGGG AGATAGAGAT TTAAAGGAAT ACAAGGCAAT TCCCCAGGTG GACACGACAT TTGACGATGT GCTTGCCAAT CCCCATAAAT ACCTGCAGGA TGCCACGACC TATTTCTATT ACGATCTGTC TGCCTGGAAA AACAAAGGTC AGCCAGCTCG TTCAGTTCAG TTGACCAGGG AAACCCACGT CAGTGACCTA GCCGCTGGTG AAAAAAGTGG TATGCACATC CAAATAAACT ATAGTGACGG ATTTGGCAGG GAAATTGAAA AGAAACTTAA GGCTGATGCA GGGGAAGCTG TTTTAAGGGA TAATGCAGGA AAACCCGTTT ACGATGCAGC GGGCAAAATT GTTAAGGATT TTGCCCAGGA TCGCTGGATT GTATCTGGCA GAACCGTTTA CAACAACAAA GCCAAGCCTA TAAAGCAGTT TATTCCCTAT TTTTCAGCCA CGCCAGATTA TGAACTGCAG AAGGACATCG ATCCCATTTT GCCCAAGCCC ACAATAATTT ATTACGATCC TTTGCTTAGG GTGGTAAAAA CAGTGAATCC CAAAGGATTT TTTTCCAAAG TAGAATTTAC GCCTTGGGAG GAAAAGCATT TTGATGAAAA TGATACGGTA AGAGACAGTG TTTATTTTAA AAATTTTAAG GAAACTTATT CCAAAGACCC ATCACAGGAG CAAAGGGATG AAAAGGATGC TCTGGATAAG GCTTCCCGTT CTTATAATAC GCCGGATACA AAGGTTTTGG ACAACACAGG TCAGACTTTC CTGGAAATTC GCAATAACCT GGGAGAGATA ACGAAAGATA TCCTTCAAGA TATCGTCAAA GGGACAGAAG TAAATTGCCA AGAGTTGTGG GATGAACTTA AATCAAAAGG ATATATTGAA ACTGGTGACC CACCTTCGGC AATGGGTTGG GTGTCGGGCA AATTTCGTCC CTATTTTAAG GGGTTTATGT TGGGGCTAGA TGGCAGGTAC AAACAGTTTG AAGAAAAAAT TATAAATTTG TTGAAAGAAA ACTGTCTTAC CACTTATCAT GAATTGGATA TTCAAGGAAA TGTTCTCTTC TCTGTTGATC CGCGACTTTA TTACTCCAAC CTGAAGGATC ATACGGACTA TTACAACTTC AAATATGTTT ATGACATGCA AAAAAAACCT CTCTCCGTAG ACAGCGCCGA CGCGGGTCTA AAGTTAAGTT TGTCCAACAT CTTTGGTAAT ACAGTTCATT CCTGGGATAG CCGCGGTTTT CATACAAGAA AAATGTACGA CAGTCTGCAA CGTTGTGTTC AGATTGGCGT TGAAGGTAAC GACGGACGAG GTCTTGTTTT GCATCAGGCG GTTGAAAAGT TTGTTTATGG AGAATTTTAC GAAGAGAAAG AAGAAGCTTC AAAGGATAAG AATTTGCGGG GTCAAGTTTA TAAACATTTT GACCAGGCCG GCGTTGTAAC TTGCAATCTC TATAACCTGA AAGGTAAGGC AGTGCAAACG GACAGGCAGT TTCTGGCCGA TTATAAAAAG GAAGCTAACT GGGATAATGT GAATAAATCC AGTCTGGCAG ATGAGCTATT CAGCATTGGC TGCTCCTATG ATGCCCTTGA AAGAGTTATT TCAGAAACAG CTCCTGATGG CAGCATTTAC ACGCATATTT ACAATCAAGC TGGTTTGCTC CGGAAAGTTG TTGTGGCTTT CAAGGATGGC AGCGAAGAGG AGTTTATAAA GGACATCCAA TACAATGCCA ATGGCCAGCG TCTTAAAATA ATTTATGGGA ACGGTGTGAC AACAGAATAT TCTTATACAG ATCCGGCCTT GCGTTTAACC GATATTTTAT CATTGAAACC AGATAGTAAT AACACAAAGG ATTTCAAGGG TTGTCTCCTG CAAAAAATCC ATTATACCTA CGATCCGGTG GGCAATGTTA CCAGACTGCG GGATAACTCA TACCCCACTG TTTTTTACAA TCAGCAAAAA GTGGAGCCCT TGAGCGATTA TTCATACAAC CCTTTATACC AGTTGGTCAG TGCCACAGGC CGCCAGCATC CCGGTATTTT TGACGGGAGT CACAGAGATG GGTTTAAACA AAGCAAATTT ATACCCATCA AGTCTTCCAA CCCCAATGAT GGTACAAGTT TGGAGAACTA CCGCCAGGAC TATCAGTATG ATGAGGCAGG AAACCTGACA AACATAAGGC ATATTTCGTC ATCGACCTCA TGGACAAGGC AGCTTGACAT ATCGAAGGGT ACCAACCGTA CTGTTCAAAT TGCTTCGTTA AACGGTGCAA AGAATTTCTT CAAAACGGCA TACGACCCCT GCGGCAACAT GCTAAATCTG GAAAACCTGG CCAGTATAAA CTGGAGCTAT AGAAATAACC TGTCTAGAGT GGACGTTATT TTAAGGGAAA ACAACAGTTC AGACAGCGAA TATTTTATTT ATGACAGCAG TGGACAGCGG GTTAGAAAGG TGAGCGAACG CAAATGCGGC TCCCTCAGGG AAATAGAGGA GAAGCTTTAT CTTGGTAACT TTGAAATTAA ACGCATTAAA AAGAAATCGG ATCATTTGGA ATCGCAAATA CTGGACAGAC AGTCCCTTCA TATTATGGAT GGCAAAAGCC GCATAGCCAT AACCGACATT TGGCTCAAGG ATGACTTAAA TCGGGAGACC GAAAAAACCA TGGAGCGCAA GTTCCGCTAT CAATTGAATA ACAACTTGGG TTCAGCTTGC CTGGAAGTTG ATGAAAAGGT AAACATAATA AGCTGCGAGG AGTACTTTCC CTACGGCGGC ACTTCTTTCA TTGCCGGAAG GGATAAGAGG GAAGTCAAAC TGAAGGAGTA CCGTTACTGC GGCAAAGAAA GGGACGACTC CACAGGCTTT TATTATTACG GTGCCCGCTA CTACCTGCCC TGGTTGGGCA GGTGGATCAA TCCCGACCCA GCTGGAACGG TGGATGGGCT TAACCTGTAT TCCTTTGTAA AGGGAAATCC TGTTAACTTT ATCGACACAA GCGGTAAGGT AGGCGGTTCC TGGTTGCACT TGCTCTATGG AGGTCTCACG GCCCTTGCGG TTGGACTGAT TGGTGGGGCC GCCGTAGGTA CGGGGGACTA TGCCTCCCCG GTTGTGGCCG CCCTGGCAGG CTTGGCCGGT ATGCTTTTTA ACAAAGATAA AAGTGCATTA GGTGCTCTGG CCATTGCTGG GGCAGGTGCC ATAGGTTCAG CCGTTGGCGG CTATGTTGGC AGGGGGACGA TGTCTAAATT AAAAGAAAAA GACTGGCAGA CCACATCTGT GGCCAGAACG GGCCTAGTGG CCTCCGGCTT AACCGGGGGA ACAATCGGTT CCCTGGGAGT ATTGGCTGTA CAGGCAGTCA CCAGGCAGTT TAATACCCAT AATATCCTAA TGGGAGCCAT TGCAGGTTTT GGCGGGGGAA TTCTGGCTTC GGGTGCCCAA TTTGGTTTAT TTAAGCCTGG CGATGCAAAA GTGCCAACCA TGCCTGTACG AGCAGAATTA AAAGACCTAT TACCTTATCA AACCCGAGCT TTTGATAGGC ATTACCTGGA ACTTAATCCT AATCCTGAAG AATTAATTAC CAATCTTAAA CCAAAACACT TTACAGTTAT TGACGAGGAA ACACAGCAAA GGGTCAAGTG CGACTTAGTA GCAGTCCATG GATATCCGCG ATTCTCCTTT GTCCAATCGG TGCATGGCGA TTACAATCAG TATATTGATA AGGAAAAACT GGTCCAACTT TTGCAGCAGG CTGGTTTTCC CCATCAGGAT TCAACCACAG GAAAAAATAT ACCCATTAAA CTTGCTACCT GCTTTGGTGG TTTCTGGGAG AGCTGGTTCA GTACAGCGCA GTTGGTTGCT GACAAGCTGG GGACGGAGGT GTATGCCCAC CGCTGGCCGG TCACTGTTGC CCAACAGAGT CCATGGAAAA AATTTACTCC TAATTAA
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Protein sequence | MGNKIKSFTN QKDKSKISFT ELSLPKGGGA IKGIGETFQP DPFSGTANLS IPVQMSPCRD FEPKISLNYN SGTGNGIFGI GFSISIPNIS RKTEKGIPRY NDTDTFLFSN AEDLVSKMVK NQEGSWVKEE RHVEENRVGW KVLSYIPRIE GLFAQIEYWQ NSWESFWKVT TKDNTTSIYG QSENARIADP HDNTRVFKWL IEKTYDAKGN KIEYFYKQED NENAPDNICE KNRTYATNKY VSSIKYGNYL DGKGEEAWAF EVVFDYGQYD ISDQYLSQPG CNPYIPARKW PARQDPFSSY RSGFEIRTLR LCRNILMFHH FKKELGETPC LVKATQLTYR EPAQQLQNSN NPFTKILQLS QVELKGFKRK ENGSYQFRSM PSLKLTYSCL MPAGGKFDTL KVGNSTAVPV STGQIRYNFV DLYGDGIPGL LYSDDKATLY WKPKGNGEYE YPEPAAQFPI EKDLKKGEYT LVSLEGNGRL DLVVGTPQRG GFYEGNPDGS WHSYRDFATY PLDFTNSHKE MIDMNGDGLA DLLLYEDNTA KIYPSLKKKG YGIPTRASLS EDYPTTSNGY AEEVLSYADM FGDGMAHRVR IRNGSVECWP NLGHGRFGKR VLFANAPRFG DTLDASRLFL ADLDGTGMTD LIYAYPDKVQ VFFNQGGNSF SPPLSIPLPE TYSNLDQLGF ADVKGNGTAC LVFIKTGANA KQYYYDFSEG TKPYLLTGID NNLGALTNIK YTSSVKYYLH DKMAGKPWKT KLPFPVQVVE KVESIDKISG LKLTTQYKYH DGFYDSVERE FRGFGFVEET DSEDFFTYAK PGLLENVAFY GLEEEHHVPP VLTKRWYHIG ACIEEGVVSK QCEKEYYQQD KRGFSIPDST FDDVVRQGCA ETLRQAYRAL KGQVIREEVY ALDYIEGRTG HPYTVTETNF HVRLIQPLIG ENRAVFSVYK KETVSFNYER NPNDPQIQHE FILAVDDFGN VKKSCRVFYP RRATPKDAVS VVHPEQTKIK AIVDLHSFIN NSLDFWLLGI SYESKTLEIG ALDLQGQACF SFTKIKDQVG RALQNCIRND EKFSSDKVQA RLLSWERNYF WNEAQDAPLP LGQITDKALL HHSEEAVFSQ ELLNTVFNGK ATIDMLEKEG GYAFQEGYWW NRGLVQHYLK DRFLLPWKTE NSYTSFPSSL YAKAVYEYDQ YSLAPVKATK FITDKITNTS SALLDYTILL PVQITDINDN VSQAFFDPLG MVIATSVFGT MGGKPAGDRD LKEYKAIPQV DTTFDDVLAN PHKYLQDATT YFYYDLSAWK NKGQPARSVQ LTRETHVSDL AAGEKSGMHI QINYSDGFGR EIEKKLKADA GEAVLRDNAG KPVYDAAGKI VKDFAQDRWI VSGRTVYNNK AKPIKQFIPY FSATPDYELQ KDIDPILPKP TIIYYDPLLR VVKTVNPKGF FSKVEFTPWE EKHFDENDTV RDSVYFKNFK ETYSKDPSQE QRDEKDALDK ASRSYNTPDT KVLDNTGQTF LEIRNNLGEI TKDILQDIVK GTEVNCQELW DELKSKGYIE TGDPPSAMGW VSGKFRPYFK GFMLGLDGRY KQFEEKIINL LKENCLTTYH ELDIQGNVLF SVDPRLYYSN LKDHTDYYNF KYVYDMQKKP LSVDSADAGL KLSLSNIFGN TVHSWDSRGF HTRKMYDSLQ RCVQIGVEGN DGRGLVLHQA VEKFVYGEFY EEKEEASKDK NLRGQVYKHF DQAGVVTCNL YNLKGKAVQT DRQFLADYKK EANWDNVNKS SLADELFSIG CSYDALERVI SETAPDGSIY THIYNQAGLL RKVVVAFKDG SEEEFIKDIQ YNANGQRLKI IYGNGVTTEY SYTDPALRLT DILSLKPDSN NTKDFKGCLL QKIHYTYDPV GNVTRLRDNS YPTVFYNQQK VEPLSDYSYN PLYQLVSATG RQHPGIFDGS HRDGFKQSKF IPIKSSNPND GTSLENYRQD YQYDEAGNLT NIRHISSSTS WTRQLDISKG TNRTVQIASL NGAKNFFKTA YDPCGNMLNL ENLASINWSY RNNLSRVDVI LRENNSSDSE YFIYDSSGQR VRKVSERKCG SLREIEEKLY LGNFEIKRIK KKSDHLESQI LDRQSLHIMD GKSRIAITDI WLKDDLNRET EKTMERKFRY QLNNNLGSAC LEVDEKVNII SCEEYFPYGG TSFIAGRDKR EVKLKEYRYC GKERDDSTGF YYYGARYYLP WLGRWINPDP AGTVDGLNLY SFVKGNPVNF IDTSGKVGGS WLHLLYGGLT ALAVGLIGGA AVGTGDYASP VVAALAGLAG MLFNKDKSAL GALAIAGAGA IGSAVGGYVG RGTMSKLKEK DWQTTSVART GLVASGLTGG TIGSLGVLAV QAVTRQFNTH NILMGAIAGF GGGILASGAQ FGLFKPGDAK VPTMPVRAEL KDLLPYQTRA FDRHYLELNP NPEELITNLK PKHFTVIDEE TQQRVKCDLV AVHGYPRFSF VQSVHGDYNQ YIDKEKLVQL LQQAGFPHQD STTGKNIPIK LATCFGGFWE SWFSTAQLVA DKLGTEVYAH RWPVTVAQQS PWKKFTPN
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