Gene Dred_0976 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0976 
Symbol 
ID4956864 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp1031799 
End bp1034537 
Gene Length2739 bp 
Protein Length912 aa 
Translation table11 
GC content45% 
IMG OID640180146 
ProductTRAG family protein 
Protein accessionYP_001112336 
Protein GI134298840 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3505] Type IV secretory pathway, VirD4 components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTTCAAC AAGTAGGAAA CAAGTCGGTT GAACTACTCA ACCGAGGCAG TGAGCTTATT 
ATTAACCGCA TCCCCGAAGG ACGTTTCAGA GACTGGGTAA ATAACCATCA AAAAATTGCC
CTTGGACTAG CCTCTTTGCC AATAGTGGTA CCTGTCGGGT ACATCCTGGA TGTCTCGAGC
ATTGGCAGAA TGGCCGGCTG GATCTATGAC ATAGGAGTGC AGCTGCAAGG TGTATCCATA
TTTTCCACCC CGGAACAAAA GGCTGCAGCT GCTCAGTGCA TTAAAATGGG CAGTTATATC
TCAAACCACA CAGGTGCAGT AACCCAAGCC TGGTTGACGG GCAGCTATGA ACCAGGAATG
CCGGTAAAGG AGCTTGAGAC AATCAAAGAG TGGTGGCAGT GGGGTAACCT AGCCCTTATG
GCCACAATAC CCTGGGTCTG GTGGAATTTT CAATGGGGTT TACCCAAACA CAGCTCTACT
AGGGTTCATG GCCTAAGAGT TGTAGATAAT GCAGCCTTCG GTACCAACAG ATGGGCTGGT
GTAAAAGACC TTAAAAACTT CTGTGAACTT GGCCCACCGG TACACCTGAA AAAAAACAAG
GACAATATAA TCAAGTTTCC CGGTGGCAAC CTGATTGGTG AGTTAGAAAG AAAAATAATC
AGGGTCAACT TTGAAAAAGT ACCCGACGAC ACTCCCAAGA CAGCACCCCA CCTTTTAGCC
TACGGTGGTA CCGGCGCTGG TAAATCCTAC AGCCTTGTAT CAGGAAATAT CATTTCTGGT
GTGTCGGATG GACAAAGCCT AGTATTAATT GATCCAAAGG GGGAGTTGTT CAAAACCTTT
GCCAAATGGC TAAATGCCAT GGGGTATGAA AATGTCTGGG CACTAAACTT TATGACTCCC
CAGCACAGCC ACCGTTGGAA CTCCGTTATT GAATGCCAAG ACGATGCTGA AATTTCCGAA
ATGGTTGACA CCCTTTCCAT CAATACCGTT GGCCCCAATC CAAGCTATTT TCAACTAAAG
GCCATGGAAC TGATGGAGGC AATTATTGGC CTCCTCAAAG GGGATTTTCC AGTAGAACAA
CAGCATATGA GAGCCATAAA CACACTGGCA GCCTGGCCCC TAGAGAAACT AGATGCACGT
TTTAAGGAGG CCTACCAGGC AGAAAGAATA AGTGCCACCA TCTACGAAAG ATGGCGGGGC
GTAGCAAAGG AAAACTACGG ATACGCCGTT TCTAACCTCA CGGCGGTGCT AAAAAACTTA
ACAACTAGCC CACTGGCAGC CTTAATGTCC GAAAAGGAAA TAGATCTAAG CGAAATAGGG
AGAAAAAAGA CCGCCCTTTT CCTGATCATT CCCACCGGTG GCGAAGGAGT TTATCTAAAA
CCAATCCTAT CCATGTTCTA TAAATTCCTC TTCAAGAGAC TAGATAAACT GGCCTTTACT
AGCCCCGGTG AACGACTTCC GGTACCGGTA AGAAACGTTT GGGATGAAAT GGCCAACGTA
GGGGTTATTC CCGGTTTACC AGAGATTATT AGTACCGCCC GGAGTAAAGG GATTCACATA
ATGATGATCT TACAGACCCC AACACAACTA GAATCTCTTT ACGGTCGAGA TGATGCTAAA
ACCATCACGG GAAACTGCCC TACGGTAATG ATGATTGGTA TTGCTCCGGC GGATCGTGAC
CTAGCTAAGA TGTTTAGCGA AATACTGGGT ACCGCAGCTG TTGAAGCTTA CAAGGTAAGT
GAGGACAGGA CAGTACCAGG AAAGCATTGG TTTGAGTTTT CCAAGAAAAC GAAAACAGTT
ATTGAACGCC CACTAATGAC CATGTCGGAG ATCTTTAAGA TTGATCCTAG ATATTGCATT
GCCCTTCTTC AATGGAGTAA CCCGGTATAT CTAAAAAAGG TAGGGTGGAC AAAACTACCT
CAGGCTAAGG ATATAAGGCG TTGCGGAATG CTGCCAATAA AAGAATATAT TCCCGCCAGG
AGTTTTGATA TTAGCCTACC AGGGGATGAC ATCCTCTCAT CCAATAACGA AGAATTAAGC
CTAGCCTTTA TAAATCAAGA TGAACAGGAG ATTCCTAGCC AGAAGGTTGA ACTATCAAAA
GTACCAGGTA CTAAGCCTGA GAAAGAATTT ATTTCAACCA AGGGAGAGAA AATTATTTCC
TTGGGAAGCT TCTTAAATAA CTGGGAAAAG GCTCCCCCCG ATAACAAGCA AATAAATGGG
GACACTCCAA CTGCTGTAAC GAATGAAATA GAAGTTACTG CACCAGGTGC AGCACCTCCT
ACTGCATCGG AGCAAATCAG TGGAGATATT GTTGAAATAA CCTGGAATGA AAATAAACAG
GAGGAAATGA TTCAAGAAGA TCCGTTAAAT CCGCCAGATG AAAATGAGCT GGTTATGTAC
CAAGGGGATT TTACAGATGT TATTCCGGAG GATTTATCGG AACAACTTCT AGAGAATACC
GGAGGTGCTT TTTTTATACC TGACATTTCA GAAAATCAAC CAGAAGATCA ATTTCTGGGG
GGAGGGGAGG AAGAAGTATC AGCCGGTGAC CTTCCAATAA ACACTGGTGA AAATTCAGTA
ACTTCGGAAC CAATGACACA AGATGAATTT ATCGCCCTGA CAGGGGCGGC ATTAGAACAT
AGTCGTGAGA ACTTAACTGG AGAAATTGTC AATGAATTGC CGGTGGAAGA CGAGATATCA
GTCCCGGCAA ATGCTAAATC AATAAATTGC TCCTGGTAA
 
Protein sequence
MLQQVGNKSV ELLNRGSELI INRIPEGRFR DWVNNHQKIA LGLASLPIVV PVGYILDVSS 
IGRMAGWIYD IGVQLQGVSI FSTPEQKAAA AQCIKMGSYI SNHTGAVTQA WLTGSYEPGM
PVKELETIKE WWQWGNLALM ATIPWVWWNF QWGLPKHSST RVHGLRVVDN AAFGTNRWAG
VKDLKNFCEL GPPVHLKKNK DNIIKFPGGN LIGELERKII RVNFEKVPDD TPKTAPHLLA
YGGTGAGKSY SLVSGNIISG VSDGQSLVLI DPKGELFKTF AKWLNAMGYE NVWALNFMTP
QHSHRWNSVI ECQDDAEISE MVDTLSINTV GPNPSYFQLK AMELMEAIIG LLKGDFPVEQ
QHMRAINTLA AWPLEKLDAR FKEAYQAERI SATIYERWRG VAKENYGYAV SNLTAVLKNL
TTSPLAALMS EKEIDLSEIG RKKTALFLII PTGGEGVYLK PILSMFYKFL FKRLDKLAFT
SPGERLPVPV RNVWDEMANV GVIPGLPEII STARSKGIHI MMILQTPTQL ESLYGRDDAK
TITGNCPTVM MIGIAPADRD LAKMFSEILG TAAVEAYKVS EDRTVPGKHW FEFSKKTKTV
IERPLMTMSE IFKIDPRYCI ALLQWSNPVY LKKVGWTKLP QAKDIRRCGM LPIKEYIPAR
SFDISLPGDD ILSSNNEELS LAFINQDEQE IPSQKVELSK VPGTKPEKEF ISTKGEKIIS
LGSFLNNWEK APPDNKQING DTPTAVTNEI EVTAPGAAPP TASEQISGDI VEITWNENKQ
EEMIQEDPLN PPDENELVMY QGDFTDVIPE DLSEQLLENT GGAFFIPDIS ENQPEDQFLG
GGEEEVSAGD LPINTGENSV TSEPMTQDEF IALTGAALEH SRENLTGEIV NELPVEDEIS
VPANAKSINC SW