Gene Dred_0874 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0874 
Symbol 
ID4957127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand- 
Start bp934741 
End bp935361 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content33% 
IMG OID640180046 
Producthelix-turn-helix domain-containing protein 
Protein accessionYP_001112236 
Protein GI134298740 
COG category[K] Transcription 
COG ID[COG1813] Predicted transcription factor, homolog of eukaryotic MBF1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.000967944 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTATG GGAAACGGGT TACATTTTTT CGTGAAAAAT TAGGAATTAG TAAAAGAAAA 
TTAGCAAAAA TGATAGGTGT AGATCCCTCA TTAATAACAA AGATTGAAGC AAATAATACT 
AAGCCATCCT TAGATACTTT GGAGAGAATT TGCACTTCTT TGGGAATCGA GCTTGCAGAT 
TTTTTTGCAG AAGAATGCAA ACAATTAAGA GTAGTATCAG ATGATTTAAA ATCATTAATA 
TATGATTTAA GAGATCTTCG TTCTTCTCAA TTATTAGCTA TAAAAAAAAT TATTTCTGAA 
TTTAGATTAG TCAATCAATC TATATCTAAT ACTTTAAGCA ATGAGGTCTT GGACTTATTT 
AATTCAAAAG AAGCAATTAC CATTGCTGGT AAGCCTATAT CATTAGAAGA AAGAATTCAG 
ATCCTAGAGG CTTTAAGAGA TATCCTTTCC CAAGAAGAAA CACCAACTAA CGAAGATGAC 
GAAGTTCTTG TAGCCAGCTA CGAAGGTGAC CAGTTATTTC ATCTACCCAC TCCAGAAGAG 
GCTGAAGACA TTCAAAGGGC TATAAAAGCA GCGATGGAGC AAAAGAGAAA AGACCAAAGC 
AATAATAACC AGTCAGAATA A
 
Protein sequence
MNYGKRVTFF REKLGISKRK LAKMIGVDPS LITKIEANNT KPSLDTLERI CTSLGIELAD 
FFAEECKQLR VVSDDLKSLI YDLRDLRSSQ LLAIKKIISE FRLVNQSISN TLSNEVLDLF 
NSKEAITIAG KPISLEERIQ ILEALRDILS QEETPTNEDD EVLVASYEGD QLFHLPTPEE 
AEDIQRAIKA AMEQKRKDQS NNNQSE