| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0781 |
|---|
| Symbol | |
|---|
| ID | 4955291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 836160 |
|---|
| End bp | 836672 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640179954 |
|---|
| Product | shikimate kinase |
|---|
| Protein accession | YP_001112144 |
|---|
| Protein GI | 134298648 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.275347 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGAGATA AAGCAAATAT TATTCTAATT GGCTTTATGG GATCTGGTAA AAGCTCCGTA
GGTAGCAGGT TGGCGAAAAA TTTAGAATTT GACTTTATGG ATATGGATAA AGAAATCGAA
CGAATAACCC AAATGGATAT CCCAAGTATA TTTAAGAAAT ACGGTGAATA CCATTTTCGT
TCCGTGGAGA CAGCTTTATT AAAAAGCTTA GGTGCAAAGG AAAAAACAGT CATTTCCACG
GGTGGTGGAA CGGCTATGTG TGCTGAGAAT TGGAAAATTC TCAGCGAATT GGGCCTGCTT
GTTCATTTAT ATGTGACGCT AGATACTGCA ATCCTTAGAA CCGGAGGCAA GGATCGGCCC
ATGCTTCAAC AAGATCGAGG ACAACTGGAA AGCATGTGGC AAAAAAGACT GTTAGTCTAT
CAGCTGGCAG AGCATACCGT TGATACCGAA GGTAGAAGTA TTGAAGAAGT TACGCAATAT
ATTGTGGATT TTATTAAAAT TTTAAAGGAA TAG
|
|---|
| Protein sequence | MRDKANIILI GFMGSGKSSV GSRLAKNLEF DFMDMDKEIE RITQMDIPSI FKKYGEYHFR
SVETALLKSL GAKEKTVIST GGGTAMCAEN WKILSELGLL VHLYVTLDTA ILRTGGKDRP
MLQQDRGQLE SMWQKRLLVY QLAEHTVDTE GRSIEEVTQY IVDFIKILKE
|
|---|
| |