| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0780 |
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| Symbol | |
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| ID | 4957265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 834077 |
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| End bp | 835639 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640179953 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001112143 |
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| Protein GI | 134298647 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2206] HD-GYP domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0195559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAGTTA CTGAAAGAGA ACTTCTTTTG AATACAGTTA ATAAATTAGA GAATAAAATA
TCACAGCTAA AGGAATCTCT AGGGGCTTGC AAACAAAGTG GGAATTTGGA TATAACTGCT
TATAAAAAGC TGGAGGAAGA ACTCCGGTTA AAAGCTCAAC TTTTGGATTT AGCATCGGAT
GCTATTTATT TAACGGATTT GGAAGGGCAT TTTATTTATT TAAACGATTC AGCCTATAAA
AACCGTGGTT ATACCCACGA AGAAATGATG AACATGAGTA TTTATGATTT TCATTTGGCT
GAGAACAGAG AGCTTGCTAA TCAACACAAA CAAACCGTAC TGGAAAAGGG TCAGAACACG
TTTGAAACTA TACATATAGG TAAAAACAGA ATGATACCCG TGGAAATCAA TTCACGGCTC
ATAGAGAAGG GGAATAAGAA GTTAATCCTT AGTATAGTGC GTGATATAAC CGAGAGGAAA
AGCTATGAAG CAAAACTCCA CTATTTAAGT ATGCACGATC ATATGACAGG GCTCTTTAAC
CGTGCCTATT TTGAACAAGC CATTGAGCGG TATAGGAATA CTAAGTGCTC GCTGGCCTTT
ATAATGGTAG ATATTAATGG ACTAAAACTA ATTAATGATA CAATGGGACA CCAAGTGGGA
GATACTCTAC TAAAGGATAC GGCTAACTTA ATTAATTCCA CCGTGGGAAA AAGGGGAGTT
GTCGCTCGCT TTGGTGGAGA TGAGTTCGCC ATATTACTGA ACAATACTGA CGAAGTACTT
CTAGAGGAAA TTAAAAGACA ACTCATTAAG GAAGTTAGGG TTTACAACAA AAAGAAACCG
GAACTTCATT TAAGTATTTC TATTGGTTAT GCTACTTCCC ATAACTCCTC AAAAACCATT
GATGAGCTTG TTAAGGAAGC AGATGATTTT ATGTATCGGG CTAAACTTCA TCGCAACAGC
AGTATACGGA GTTCTCTGGT TCAAACCTTA GTCAAAGCAT TAGAAGCAAG GGACTTTATA
ACAGAGGGTC ATGGAAATCG TCTGGAAGAT ATTATGAGTC TAATTGGTAA GAGAGTAAAC
CTTCCCAGCA GCAAAATCTA TGATCTACGT CTCCTGGCAC ATTTTCATGA CATTGGTAAG
GTGGGTATCC CTGACCGTAT ACTTTTTAAA CCGGGTGCCC TAACGCAGGA TGAACGCAAA
GAAATGCAGC GTCACTCGGA AATTGGATAT CGTATAGCAC AGTCTTCAAC GGAGCTAATG
CCTATTGCCA ATTGGATACT TCAACACCAT GAGCGTTGGG ATGGAAAAGG TTACCCCTTG
GGGATAAAAG GTGAGGAAAT CCCGTTAGAG TGTAGGGCTT TAGCCATTGT GGATGCTTAT
GATGCCATGA TAAACGATCG CCCCTACCGA AAGGGTATGA CACATAAGGA TGCAATATGG
GAATTGTCTC GTTGTGCCGG AACCCAGTTT GATCCCCATC TCCTACCGAT TGTGGTGGAG
ATTTTAGAAG ATGTTTACCA GAAAAATAAA AAAAATAATT ATACAAACTC CACTACTTCT
TGA
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| Protein sequence | MLVTERELLL NTVNKLENKI SQLKESLGAC KQSGNLDITA YKKLEEELRL KAQLLDLASD
AIYLTDLEGH FIYLNDSAYK NRGYTHEEMM NMSIYDFHLA ENRELANQHK QTVLEKGQNT
FETIHIGKNR MIPVEINSRL IEKGNKKLIL SIVRDITERK SYEAKLHYLS MHDHMTGLFN
RAYFEQAIER YRNTKCSLAF IMVDINGLKL INDTMGHQVG DTLLKDTANL INSTVGKRGV
VARFGGDEFA ILLNNTDEVL LEEIKRQLIK EVRVYNKKKP ELHLSISIGY ATSHNSSKTI
DELVKEADDF MYRAKLHRNS SIRSSLVQTL VKALEARDFI TEGHGNRLED IMSLIGKRVN
LPSSKIYDLR LLAHFHDIGK VGIPDRILFK PGALTQDERK EMQRHSEIGY RIAQSSTELM
PIANWILQHH ERWDGKGYPL GIKGEEIPLE CRALAIVDAY DAMINDRPYR KGMTHKDAIW
ELSRCAGTQF DPHLLPIVVE ILEDVYQKNK KNNYTNSTTS
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