| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0580 |
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| Symbol | |
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| ID | 4958121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | - |
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| Start bp | 623601 |
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| End bp | 625085 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640179757 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001111947 |
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| Protein GI | 134298451 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCAAAA ACAACCTGTT AAAATCTCTA ATAAACTTTA ACGCAGCTGA AACAAGTTGT
AAAAATGTCA GTGCCGATTA CGACTTGGTT ATTAATTCCT TAGATTGTTT GGAAGATTGT
TATTTTTCAA TAGTTGACGC AACAGGTAAA ATTATTTTCG TGTCAAAAGA TTTTGAAAAA
ATAGATGGTT ACAAAATTAG CGATATATTG GGGAAAAATG TATTGGATGT TTACAAATTG
GGTAAACAAA ATAGTGTACA TGTAAGATCA ATAGCTGAAA AAAAGGTATT GAAAAATACT
AAACTAAGAT ATACCTCAGC CTCTGGTCAA CCTGTTGACC TCGTAATGGA TATATATCCG
GTTTTTTCGG GACGAGAGGT AATTGGTTCA TTTGCCATAA GTCGAGACAC AAGCAAAATA
CAAGCACTTA CAGACAAAGT ATTTCAACTT CAAAAAGCCC TTTATAATCA ACTACAGAGA
ACGAACAATA ACGGAACCCA GTTTTGTTTT GATGACATCA TTGGTTCTGG AGAAGCCATG
CAAAGCGTAA TTAATACAGC GAAAAAAATG GCCTGCTCGG AATCACGGAT CATGATTCTG
GGAGAAACAG GAACAGGCAA AGAGCTCTTT GCCCAGAGTA TTCATAACAA CAGCTCAAGA
GCCAAAGAGC CTTTTATCGC GGTTAACTGT TCAGCCATTC CAGATACCTT ATTAGAAAGT
ATCCTGTTTG GGACAAATAA AGGTGCATTT ACCGGAGCTG AGGATAAAGC CGGGTTGTTC
GAAGAAGCAA AAAATGGCAC ACTTTTTCTG GACGAACTTA ATTCTATGAG TATCGTTCTC
CAGTCCAAAC TATTAAGAGC ATTGGAAACG AATCGCATTC GCAGGGTGGG AGGTAACAAA
GAAATCCCTG TAAACCCTCG AATTATTAGT GCTATGAATA TTGACCCTAA AGAAGCCATT
GAAACTGAAA AACTAAGGAG TGATTTTTAT TACAGACTCG CTGTGATCAC TTTAGAATGT
CCACCTTTAC GAAACAGAAA GGAAGATATC ATTACCTTAT CCTGGTTTTA CATCAATAAA
TATAATAAGA TTCTGGGGAG AAAAATTAAC GAGATATCCG AAGAAGTAAT TCAAATACTG
GAAAACTATA ACTGGCCAGG AAATGTTCGC GAATTAAGTC ATTGTATCGA GCATGCGATG
AACATAGTTG ATCCTACTGA TACTTCCCTG TTAGTGCAGC ATTTACCCGC GTTCCTCCAG
GACAAAATCC TCAAGAATAA TATTTTGCCG ATCACCGTGC CAAAAATTAA CGATTATAAA
CAAATAATGC TGCAAGTAGA AAAAGACCTC TTGACACAAG CACTAAAAAG AAATACCGGC
AATATTAACC AAACCGCCAA AGAATTAAAT CTGTCCAGAC AATGTTTATA TTATAAGCTG
AAACGATTAG ATATCGACAT TCAGCATGAG ATTTATATAG AATAA
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| Protein sequence | MTKNNLLKSL INFNAAETSC KNVSADYDLV INSLDCLEDC YFSIVDATGK IIFVSKDFEK
IDGYKISDIL GKNVLDVYKL GKQNSVHVRS IAEKKVLKNT KLRYTSASGQ PVDLVMDIYP
VFSGREVIGS FAISRDTSKI QALTDKVFQL QKALYNQLQR TNNNGTQFCF DDIIGSGEAM
QSVINTAKKM ACSESRIMIL GETGTGKELF AQSIHNNSSR AKEPFIAVNC SAIPDTLLES
ILFGTNKGAF TGAEDKAGLF EEAKNGTLFL DELNSMSIVL QSKLLRALET NRIRRVGGNK
EIPVNPRIIS AMNIDPKEAI ETEKLRSDFY YRLAVITLEC PPLRNRKEDI ITLSWFYINK
YNKILGRKIN EISEEVIQIL ENYNWPGNVR ELSHCIEHAM NIVDPTDTSL LVQHLPAFLQ
DKILKNNILP ITVPKINDYK QIMLQVEKDL LTQALKRNTG NINQTAKELN LSRQCLYYKL
KRLDIDIQHE IYIE
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