| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0540 |
|---|
| Symbol | |
|---|
| ID | 4957602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 587825 |
|---|
| End bp | 588331 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640179719 |
|---|
| Product | CRISPR-associated Cas4 family protein |
|---|
| Protein accession | YP_001111909 |
|---|
| Protein GI | 134298413 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1468] RecB family exonuclease |
|---|
| TIGRFAM ID | [TIGR00372] CRISPR-associated protein Cas4 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAATATG TGATGGTTCC TGTTACCGGA ACGCTTATTT GGTACTATTA CATTTGCCAG
CGGGAGGTTT GGTTAATTGG CCATCAAATT ACACCGGACC AAAGTGATTC TAATATATCC
CTGGGAAGGT ATATTCACGA AAACTCATAC GACAGAGAAA GAAAAGAACT TGTCATTGGC
CATAGTAAAA TGGATGTATT CCGAGTTAGT AACGGGGAAC TAGTTGTAGG AGAGGTTAAA
AAAAGCTCAA AGTATAGTCA GAGTGCCCGT ATGCAACTTG CTTTTTATCT AATGGAATTA
CAAGACCGTG GGATTAAGGC CAGGGGGGAA CTTCGCTTTC CCCAGGAGAA AAAGCTAGAA
GAAGTTGTTT TGGATGAAAA TATCCTGGAA GAACTGGGGA GGGCTTCCCA AGCGATTACC
CAAATACTAA GCTTGCAAAG ACCTCCGGAA CCTAAAAAAA TAAATTTTTG TAAAAACTGT
GCCTATGCTG AATTTTGCTG GGCTTGA
|
|---|
| Protein sequence | MEYVMVPVTG TLIWYYYICQ REVWLIGHQI TPDQSDSNIS LGRYIHENSY DRERKELVIG
HSKMDVFRVS NGELVVGEVK KSSKYSQSAR MQLAFYLMEL QDRGIKARGE LRFPQEKKLE
EVVLDENILE ELGRASQAIT QILSLQRPPE PKKINFCKNC AYAEFCWA
|
|---|
| |