Gene Dred_0535 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0535 
Symbol 
ID4957550 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp579304 
End bp580062 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content41% 
IMG OID640179714 
ProductCRISPR-associated Cas family protein 
Protein accessionYP_001111904 
Protein GI134298408 
COG category[L] Replication, recombination and repair 
COG ID[COG1583] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) 
TIGRFAM ID[TIGR01877] CRISPR-associated endoribonuclease Cas6 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGCTAC AACTACTATT GGACTCAGAA AACCCAGTAT TGTTGGCTAC TAATTATCAA 
CAACAAATTC AGGGGTTAAT TTATAATTTA TTAACCGACC CACTTATGCA GGCATTTCTA
CATGATCATG GTTTTGATTA TAACCAACGA CGCTTTAAGC TATTTACTTT TTCCAGGCTG
ATGGGGAAAA GTTACTTTAA CCAGCAGGAT AAAACCCTAA GGATCACTCC GCCGGTATTA
CTCTACATCT CCAGTCCTTG GACAGAGTTT CTGGAAAATC TGGCCAACAG CCTATTAGCT
CGGGGGTTCA TTCAAATTGG TAAAAATCAA TTGCAAGTGA AAGAAATTAA ATTGGCAGTG
ACACCACCTT TTAATCAAGA CCAAAGCTAT CCCGTTAAAA TGCTCTCCCC GGTAACGATG
TATAGCACCC TTGAAACGAG GGAAGGCAGC AAAAAAACCT ACTACTATTC CCCGACTGAG
AGGGAGTTTA CTAGGCTAAT CGCTCAAAAT TTAGTCAAAA AGGCCAGTGC CTTTTACGGT
GAGGATTGGT CTAAACTATT CTTCTGCATT GAAGTAGCAA ATTCATTTCG AGCAAGCCAG
CAGAAAATCA TCATCTATAA AGGAACTGTG ATTAAAGGTT GGTTAGGGAA TTATCATATT
TCGGGCCACC CCAAAATGTT AAAATTGGCC TACGAATCTG GCATTGGCAG CAAGAACAGC
CAGGGGTTTG GGTTGTTTGA ACTGTGTAAC AACGGATAG
 
Protein sequence
MRLQLLLDSE NPVLLATNYQ QQIQGLIYNL LTDPLMQAFL HDHGFDYNQR RFKLFTFSRL 
MGKSYFNQQD KTLRITPPVL LYISSPWTEF LENLANSLLA RGFIQIGKNQ LQVKEIKLAV
TPPFNQDQSY PVKMLSPVTM YSTLETREGS KKTYYYSPTE REFTRLIAQN LVKKASAFYG
EDWSKLFFCI EVANSFRASQ QKIIIYKGTV IKGWLGNYHI SGHPKMLKLA YESGIGSKNS
QGFGLFELCN NG