| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0515 |
|---|
| Symbol | |
|---|
| ID | 4957365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 555014 |
|---|
| End bp | 557647 |
|---|
| Gene Length | 2634 bp |
|---|
| Protein Length | 877 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640179695 |
|---|
| Product | type III restriction enzyme, res subunit |
|---|
| Protein accession | YP_001111885 |
|---|
| Protein GI | 134298389 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG3587] Restriction endonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAA AATTTGACAG CAACCAGCAG TACCAACTGG ATGCCATCCA AGCCATCGTA
GATGTGTTCA AGGGACAACC CCGCTCCCAG GGCAAATTTG AAGTGGACCT AATGGGTCTC
TCCAGCGGTA TGTTTAACGA ACTGGGTGTG GGGAATCACC TGACCCCGGA TGAAGATACC
ATCCTGGCGA ACCTAAAAGA AATCCAGGAG CAAAACGGCA TCCCCCAGGC TGAAGCATTG
GACGGCATGA ACTTCTCGGT GGAGATGGAG ACCGGCACAG GGAAAACCTA TGTTTACCTC
CGTACCATTC ATGAACTTTA CGCCCAGTAT GGTTTTACCA AGTTTATTAT CGTAGTGCCC
AGTGTGGCCA TTCGGGAAGG GGTACTCAAG AACCTGTCCA TTACCAAAGA GCATTTTCAG
GGCATTTATG GCAATCAACC CTTTGACTAC TGGGTGTATG ATTCCAAAAG GGTATCGTCC
TTGCGTCAGT TTGCCAGTTC AAATCAACTA CAAATATTGG TTATCAATAT CGATGCCTTC
AATAAAAAAG AAAATAACGT CATCCATAAA GAAAACGACC GACTGTCTGG CCGCAAACCC
ATTGAATTCA TCCAGGCCAC CCAGCCCATT GTCATCGTGG ATGAACCACA AAACATGGAA
AGCACCCAGG CCAAAGAGGC CATCCAAAGC CTCAACCCCC TTTGTACCCT GCGCTACTCG
GCCACCCATC GGCATATATA CAACTTGCTT TACCGTCTGG ACCCAGTGAA GGCCTACGAT
ATGAAGCTGG TGAAACGCAT TGAGGTGGAT TCGGTACTGG AGGAAGATAA CTTCAACCAG
CCCTACATCC GGGTGGAATC CATCAAGGCC ACCAAAACCA AGATCACTGC CAAACTAACC
ATCGACTGCA AGCAGGCCGA TGGCGTTAAG CGGACCAGTG TCTCCATCAG CAAGAATGGC
ACAGATCTGT ACGAACTCTC AGGTAACCGG GAACTTTACC AGGGCTACAT TGTAGACCAT
ATCGATGCAG GTAGTCAGTA TATCGCCTTT ACCAACGGAG TGGTTTTAAA TACCGGCCAA
CAAATGGGCG GTTATAACGA CGATATTATG AAGGTGCAAA TTCGGGAAAC GGTCAAGGAA
CACCTGGAGA AAGAACTCCA CATTTACAGG AATCTGCCCG AGGGAAAACG CTTAAAGGTG
CTATCCCTGT TTTTCATTGA CAAAGTGGCC AATTATGACG ATGCCGAAGG CAAAATCCGC
CTGTGGTTTG AGGAAGTGTA TCAGGAATTA GCCTTTAAAC CCCGCTATCG AGAACTAAAC
TTACCACCTG TGGAGGCAGT CCATAGTGGT TACTTCGCCC AAAGTAAGGG CAAGGCCAAA
GATACCAGCG GGAAAACCAA AGCAGATGAC GAAGCCTACC AGTTGATCAT GAAGGATAAG
GAAAGGTTAC TCTCCCTGGA GGAACCGGTC CGGTTTATCT TCAGCCACTC GGCCCTACGG
GAAGGTTGGG ACAACCCCAA CGTATTCCAA ATCTGTACCT TAAACGAAAC CAAATCCGAG
ATGAAGAAGC GACAAGAAAT CGGCCGGGGC TTGCGATTAC CTGTAGATCA AACCGGTCAC
CGGGTCTTTG ATACCACCAT GAACCGTCTC ACCGTCGTCG CCAACGAAAG CTACGAAGAC
TTTGCCCGTT CCCTGCAGAC TGAAATCGAA GAGGAATGTG GTGTGCAGTT TGAAGGTCGC
ATTGATAATA AAAGACAACG CCGTACAGCT AACCTGAAAA AGGGCTGGCG CATGGACGAA
AACTTCCTGG CTCTCTGGGA TCGCATTAAG TATAAAACCA GGTATTCGGT AAAGTACCAA
ACAGGTCATC TGATAGCCCA GGCTGCCCAG GCCATTAAGA AAATGCCCGC TATCGAAAGC
CCCAAAATCA TGGCCCAAAA ACGGGGGCTA GAGATTACCA GCAAAGGCTT GGAAACTCGT
ATGTTATCGG TCCAAGAAAC CAAAGTCGGC TACTCCGGCC TGCCGGTACC GGATTTACTT
AGTTACATCC AGCGGGAAAC CGAACTTACC CGCAGCACCA TCGCTCAAAT CCTAATCAAT
TCGGAAAGGC TGGCAGACGT AGCAGTAAAC CCCCAACGCT TTCTGGAGGA AGCCACCAAA
GCCATTAAGG AAACCCTGCA CAGCATCATG ATCGACGGTA TCCAATACGA ACGCATTGAC
GGCGCAGAAT ATGAGATGCT TCTCTTTGCA GACCCCAAGC ATGAAATTCG CGGCTATGTC
AATCGGATGC TGGAAGTAAA GGGTTCCATT TACGATGCCA TCGAATTCGA TTCCGAAGTG
GAAAAGGAAT TTGCCCAGAA TTTAGACGCG CGACAGGATA TCAAACTCTT CATTAAACTC
CCACGCTGGT TTACAGTGGA AACGCCCCTG GGCACCTATA ACCCAGACTG GGCCATCGTC
AAGCAGGCCG TAGGAGAAGA CGAGAAACTT TACCTAGTTA GCGAAACCAA ATCTACGAAG
GACTTGTCTA AGCTACGAGA CAGTGAACGG GATAAAATTG AGTGTGGTAA GAGGCACTTC
AGTGCACTGC CGGAGGTTCA GTTTAAGCAT GTGAAAGATG CTTCGGAGGT GTAA
|
|---|
| Protein sequence | MKIKFDSNQQ YQLDAIQAIV DVFKGQPRSQ GKFEVDLMGL SSGMFNELGV GNHLTPDEDT
ILANLKEIQE QNGIPQAEAL DGMNFSVEME TGTGKTYVYL RTIHELYAQY GFTKFIIVVP
SVAIREGVLK NLSITKEHFQ GIYGNQPFDY WVYDSKRVSS LRQFASSNQL QILVINIDAF
NKKENNVIHK ENDRLSGRKP IEFIQATQPI VIVDEPQNME STQAKEAIQS LNPLCTLRYS
ATHRHIYNLL YRLDPVKAYD MKLVKRIEVD SVLEEDNFNQ PYIRVESIKA TKTKITAKLT
IDCKQADGVK RTSVSISKNG TDLYELSGNR ELYQGYIVDH IDAGSQYIAF TNGVVLNTGQ
QMGGYNDDIM KVQIRETVKE HLEKELHIYR NLPEGKRLKV LSLFFIDKVA NYDDAEGKIR
LWFEEVYQEL AFKPRYRELN LPPVEAVHSG YFAQSKGKAK DTSGKTKADD EAYQLIMKDK
ERLLSLEEPV RFIFSHSALR EGWDNPNVFQ ICTLNETKSE MKKRQEIGRG LRLPVDQTGH
RVFDTTMNRL TVVANESYED FARSLQTEIE EECGVQFEGR IDNKRQRRTA NLKKGWRMDE
NFLALWDRIK YKTRYSVKYQ TGHLIAQAAQ AIKKMPAIES PKIMAQKRGL EITSKGLETR
MLSVQETKVG YSGLPVPDLL SYIQRETELT RSTIAQILIN SERLADVAVN PQRFLEEATK
AIKETLHSIM IDGIQYERID GAEYEMLLFA DPKHEIRGYV NRMLEVKGSI YDAIEFDSEV
EKEFAQNLDA RQDIKLFIKL PRWFTVETPL GTYNPDWAIV KQAVGEDEKL YLVSETKSTK
DLSKLRDSER DKIECGKRHF SALPEVQFKH VKDASEV
|
|---|
| |