| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0488 |
|---|
| Symbol | |
|---|
| ID | 4956916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 529494 |
|---|
| End bp | 530327 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640179659 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_001111859 |
|---|
| Protein GI | 134298363 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | [TIGR00417] spermidine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000641505 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTAT GGTACTCAGA AAGAGGAATA GTCCCCGGAT TAGCACTAAG TGTTGAAGTA
AGCAAAGTGT TGCACGAAGA GCAAACAGAT TTTCAGCATT TGGCAGTTGT GGATACACCC
CTTTGTGGTC GTATGCTCTG GTTGGACAAC ATTATTATGA CGAGTATTAA GGATGAATTT
ATTTATCATG AAATGATTAG CCACGTGGCT TTAAATACTC ATGAAAACCC CAAGAAGGTA
TTAGTTATCG GTGGTGGCGA CGGTGGCGCC ATTCGTGAAA TTATTAAGCA CCCCAGTGTT
GAGAAGGCTG TGTTGGTGGA GATCGACCGT AGAGTAGTGG AAGTCTCTAA AGAATATCTG
CCGGAGATTG CCTGTGCACT GGATGATCCG AAAGTAGAAG TTCACTGCGT GGATGGTATC
CAGTATGTAA GGGATCACAA AAATGAATTT GATGTTATTC TTGTGGACTC CACCGATCCT
ATCGGTCCTG CTGTTGGTTT ATTTGAAGGC AGCTTCTATA AGAATTGTTA TGACGCATTA
AAGGAAGATG GTATCTTTGT TGCTCAAACC GAATCTCCCT ATTATAATGA GGAATTGATT
CCTAAGGTAA ACAAAGATAT TCGGTCCCTA TATCCTATTA CTAACATTTA CCTAGCCTAT
GTGCCTACAT ATCCCAGTGG CTGCTGGACC TTTACCATGG GTTCCAAGAA ATACGATCCC
AAGGCGGTAG ATTTTAGTAC CAGACCCAGC TACAAAACCC GTTACTATAA TCATGATGTG
CATAAAGCAG CCTTTGCGCT CCCTAATTTT GTACAAGAAT TAATTAATAA ATAA
|
|---|
| Protein sequence | MELWYSERGI VPGLALSVEV SKVLHEEQTD FQHLAVVDTP LCGRMLWLDN IIMTSIKDEF
IYHEMISHVA LNTHENPKKV LVIGGGDGGA IREIIKHPSV EKAVLVEIDR RVVEVSKEYL
PEIACALDDP KVEVHCVDGI QYVRDHKNEF DVILVDSTDP IGPAVGLFEG SFYKNCYDAL
KEDGIFVAQT ESPYYNEELI PKVNKDIRSL YPITNIYLAY VPTYPSGCWT FTMGSKKYDP
KAVDFSTRPS YKTRYYNHDV HKAAFALPNF VQELINK
|
|---|
| |