| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0455 |
|---|
| Symbol | |
|---|
| ID | 4956530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 497012 |
|---|
| End bp | 498556 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640179625 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_001111826 |
|---|
| Protein GI | 134298330 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCTGG TAATCGGGGC CTTTATGGCG ATTTTAGACA GCAGTATTGT CAACGTTGCA
CTGCCTCGTT TTATGACCCT CTTCGGTTCC TCGGCGGATG AAATTCAATG GATTCTGACC
GGCTACATGC TAACCTCCGG AGTGGTGGTG CCCATTACCG GTTATCTGGG GGACCGATTT
GGCAACAAGC GTATGTATAT CTGGTCGGTG GCAGCCTTTA CCATAGGGTC TTTGCTTTGC
GGTCTGGCCT GGAGCACCAA TTCTCTGACC ATATTCCGGG TCATTCAGGC CATTGGCGGT
GGTATGATTA TTCCCATCAG TATGGCCATG ATCTATCGTA TTATTCCTCG GCAGAAGATA
GGTATGGCTC TGGGGATCTG GGGTATTGCT GCCATTATGG CACCGGCCAT TGGTCCTACC
CTAGGGGGCT ATCTGGTGGA TCATTTCAGT TGGCAGTGGA TCTTTACCAT TAACATCCCC
ATTGGCATAG CCGCCATTAT GTTGTCCATT GCATACCTGG AAGAAACACC GATACAAAAA
AATCTGAAAC CGGATATTCC TGGAATTTTA TTGAGTTCAG TGGGCTGCTT TGCACTGCTG
TTGGCCCTTA GTGAGGGACA GGATAAGGGA TGGACCTCCC AGTATATTGT TACTTTACTG
GTTCTATCGG CCTTTACGCT AATTCTCTTT GTCATGTGGG AGTTGCAAGC ACCAAACCCG
CTTATCGATA TCCGGTTGTT GAATAATCCA GTCTTATCTG CCAGTTTGCT GGCCACTTGC
ATTGCCACCA TTGGATTATT CTCGGCGGTT TTCTTAATCC CCATCTATGC TCAAAACCTG
CTAGGTTATA CTCCAATGGA AACAGGCTTA ATGATGATGC CGATGGCCCT TGTAACCGGC
TTCATGATGC CCATTAGCGG TAAGCTGTTT GATAAATTTG GTGCCTTTTG GCTTGGTATT
GTCGGGATGT CCATTGTTGT GGGGGTAACC TATTACCTGC ATACCCTTGG TCTGGATACA
AGTTACCACC ATATCCAGAT CATATTATCC ATCAGGGCTG TGGGTTTAGG CTTGGCCACT
ATGCCCCTGA CCACAGCCGG CATGAATACA GTTCCTAGGT TTTTGGTGGG CAGGGCATCG
GCCCTTAATA ATACCGTAAG ACAAATCTCT GGTTCAATGG GCATTGCCTA TTTAACTTAT
GTCATGCTGC AACGCCAGGC CTACCACACA GCCATTCTAA CTGAAGGAGT CAGTATAAGT
TCAATGGCAG CTGTACAGGC CCAGGGGCAA ATGCAAAGTT ACCTAGCTGC CAACGGAATG
GCTGGTCAGG CAGCGGCTCA GGGGTCTTTA GGGATCATTT CCGGCTTAAT AGCTCGTCAG
TCCTTCATGA CTGCACTGGA TGACACCTTT GTGGTTAGCG CCATTATTAT TGCCTTTGTT
TTACCTATGA TGTTCCTGCT GAGCAAACAC AGAGTGGAGA AAGAAAGAAA AAGACAGGAA
GCAAGATATG CACATTTGTT TCAGGGAACC TCCGGCGTCA TATAA
|
|---|
| Protein sequence | MILVIGAFMA ILDSSIVNVA LPRFMTLFGS SADEIQWILT GYMLTSGVVV PITGYLGDRF
GNKRMYIWSV AAFTIGSLLC GLAWSTNSLT IFRVIQAIGG GMIIPISMAM IYRIIPRQKI
GMALGIWGIA AIMAPAIGPT LGGYLVDHFS WQWIFTINIP IGIAAIMLSI AYLEETPIQK
NLKPDIPGIL LSSVGCFALL LALSEGQDKG WTSQYIVTLL VLSAFTLILF VMWELQAPNP
LIDIRLLNNP VLSASLLATC IATIGLFSAV FLIPIYAQNL LGYTPMETGL MMMPMALVTG
FMMPISGKLF DKFGAFWLGI VGMSIVVGVT YYLHTLGLDT SYHHIQIILS IRAVGLGLAT
MPLTTAGMNT VPRFLVGRAS ALNNTVRQIS GSMGIAYLTY VMLQRQAYHT AILTEGVSIS
SMAAVQAQGQ MQSYLAANGM AGQAAAQGSL GIISGLIARQ SFMTALDDTF VVSAIIIAFV
LPMMFLLSKH RVEKERKRQE ARYAHLFQGT SGVI
|
|---|
| |