Gene Dred_0383 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0383 
Symbol 
ID4955659 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp411459 
End bp413699 
Gene Length2241 bp 
Protein Length746 aa 
Translation table11 
GC content43% 
IMG OID640179552 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_001111756 
Protein GI134298260 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG2206] HD-GYP domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATATT ACCAAAAAAC TCCCCCAAGA AAAATACCAA TTCAGACTAA AGACTCCTTG 
CTCAAAATCA TTTCTGAACT AGAGCAGAGA TTGCAACAAA TTACCAATAA CATGTTAGAT
CTGTATACCG AAACAGACCT AGCGGGTATT ATTCGATACG TCGGTCCCTC TCACAAAACC
ATTTTAGGCT ATGACCCAAA AGCACTCAAA GGAACATCAG TTTTCTCTCG CATTCATCCC
AAGGATATAA GTAAGGTAAC CGATGCTTTT CAGACTGCGC TTAACTCAGC TTCTGAAATA
ATTGTAGAAT ATCAACTACA ACATGCAACT GGTCATTATT TATGGGTTGA GTCCGTTGGT
CGGTGCTTAG TGGAAGGAGA TAGAAGAACA GGCGTTGTTA TCAGCACCCG AAACATTACA
AAACGAAAAG AGTTTGAAAA TGCCCTGAGA GAAAGCGAAT TTCGATTTCG GCAGATTACC
GAAAACATGC GCGACATCAT TATACAAATT GATAAATGTG GAACTCTTAC CTATGTCGGC
CCATCTGTAA AGTTTCTCTT GGGTTATCAA CCTGAGAGGC TTTTAGGGAA AAAGGTGTTT
GAATTATTGC ACTCGGAGGA TTACGATAAA ACCACTAAAC TATTTGCAAA TAGTTTAGCA
AACTATACGG AAGGCGAATT TGAATGTCGC TGTCGTCATG CAGACGGGCG CTATCTCTGG
CTGGAATGTG CAGGAAAAAT ACTATCAAAT AGTCATGGTC AGGCCACAGG AGCTATTATC
ACTGCCAGGG ATATAACGGA TCGGAAAATG ACGAAGCAGG CCCTCCTAGC AAGCGAAGAG
CGAATCAGCC GTATAACTGA GAATATGCTT GACATTATGG TTGAGCTAAA TTCGGAAGGA
ATTACACAGT ATGTCAGTCC CTCAGTTAAA ACTGTTTTAG GATTTGATCC TAAAGACCTC
CTAGGAGTAC CGGTATTTAA GAACGTTCAT CCAGAAGACC TTGATCGGGT TCTTGAAGCC
TATGAAAAAA GCATCAATCA CTGGTCTTGT ATGAGGGTTG ATTTTCGTTA TAAAAATGCA
CAGGGCTATT ACCGCTGGTT GGAATTAATC GGCAATATCC TGCAGGATGA GCATGGATCA
GTGAGCACCA GTATCTTATG CCTACGTGAT ATCACCGAGC GCAAGTGGGC CGAACTACAA
ACAAAGTATT TCAGTATGCA TGATCCCGTC ACAGGACTCT ATAACCGTAC ACACTTTGAG
TTGGAGATGC GCCGACTGGA AAACAGTTCT GAGCCTGTGG GCTTGATTGT TGCAGACTTG
GACGGTCTAA AACTGATCAA TGATACCATG GGCCACGAGG TCGGAGACAA TGCCCTAAGG
GCCGTAGCCA ATATATTAAA AATATCTTAC CGCGAAGAAG ATATTGTTGC TCGAATCGGT
GGAGACGAGT TAGCGGTTAT ACTGACAAAT GTGTCTATGG ATACCCTAAA GGTTGCTGTG
TCTCGTTTAG AAAAAAACAT CAAGGATTAC AACATGGAAA ACCCAGGAAG TCATTTAAGT
TTGTCCATCG GTTATGCTCT GCGGGAACCT CCCACTAAAC CTTTGAATGA GGTCTTTAAA
GAAGCCGATT ACTATATGTA CCGTGCAAAG TTACACCATG CAAAAAGTAC ACGCAGTTCC
CTTGTACAAA CTCTTATGAA AGCTCTGGAA GCCCGGGATT TTATCACAGA GGGTCACGGG
GACCGCATGA AAAGTCTGGT TGTAAACATA GGTAAAGCCC TCGGGTTACC CGAAAACAAA
ATCTACGACC TGCAGCTTTT TGCACATTTT CATGACATTG GTAAAGTGGG TATTTCTGAT
AAGATTCTTT TTAAACCCAC AAAACTTACA CCGGACGAAC ATAATGAAAT TAAACGTCAC
TGCGAGATTG GCTACCGCAT TGCTCAAGCA TCTCCGGAAC TATTGCCCAT AGCCGATTGG
ATTCTCAAGC ACCATGAATG GTGGAACGGA CAAGGTTATC CCCTGGGATT AAAGGGAGAA
CAAATCCCTT TAGAATGCCG CATACTGGCC ATTGCAGACG CCTACGATGC CATGACCAGT
GACCGTCCTT ATCGAAAGGC CATCAGTCAC CAAGAAGCAA TTCGTGAGTT GGAACGCAAT
GCAGGAATAC AGTTTGATTT ATTTTTACTG CCAATGGCCG TCAAGGTTAT TGAACAATCT
CTGGCCTTCT CGGTAGATTA A
 
Protein sequence
MEYYQKTPPR KIPIQTKDSL LKIISELEQR LQQITNNMLD LYTETDLAGI IRYVGPSHKT 
ILGYDPKALK GTSVFSRIHP KDISKVTDAF QTALNSASEI IVEYQLQHAT GHYLWVESVG
RCLVEGDRRT GVVISTRNIT KRKEFENALR ESEFRFRQIT ENMRDIIIQI DKCGTLTYVG
PSVKFLLGYQ PERLLGKKVF ELLHSEDYDK TTKLFANSLA NYTEGEFECR CRHADGRYLW
LECAGKILSN SHGQATGAII TARDITDRKM TKQALLASEE RISRITENML DIMVELNSEG
ITQYVSPSVK TVLGFDPKDL LGVPVFKNVH PEDLDRVLEA YEKSINHWSC MRVDFRYKNA
QGYYRWLELI GNILQDEHGS VSTSILCLRD ITERKWAELQ TKYFSMHDPV TGLYNRTHFE
LEMRRLENSS EPVGLIVADL DGLKLINDTM GHEVGDNALR AVANILKISY REEDIVARIG
GDELAVILTN VSMDTLKVAV SRLEKNIKDY NMENPGSHLS LSIGYALREP PTKPLNEVFK
EADYYMYRAK LHHAKSTRSS LVQTLMKALE ARDFITEGHG DRMKSLVVNI GKALGLPENK
IYDLQLFAHF HDIGKVGISD KILFKPTKLT PDEHNEIKRH CEIGYRIAQA SPELLPIADW
ILKHHEWWNG QGYPLGLKGE QIPLECRILA IADAYDAMTS DRPYRKAISH QEAIRELERN
AGIQFDLFLL PMAVKVIEQS LAFSVD