| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0319 |
|---|
| Symbol | |
|---|
| ID | 4958147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 332674 |
|---|
| End bp | 333927 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640179484 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001111692 |
|---|
| Protein GI | 134298196 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA TTAGGGATTG GGGATTAAAG GAGTTTATCA AGCAAAAATC AAAAAAGTCC
CTTGGGATTG CATTGATCGT GGCCATTGCC TTGACCGGGG GAACAACCTA CTGGTTGCAG
AGACAAAGTG CAGATAAAAG TTCCGAACCT CAATATGAAC AGGCCCAAGT AAAAAAGGAA
GATATCATAG TAGGCTTGGA CTCCGATGGA ACCATTGATT TTTCTAAAGT TAAGCTGCGC
TTTGGTGTTA GGGGAACCAT TGCAGAAATC CTAGTGGCTG AAGGTGATGA GATACAAAAG
GGTCAGATCA TTGCTAGGTT AGATGACAGG GACTATCAGG ACCAGTACCA GTTAGCCCTG
GCAAAACTGC AAGATGCCCA GGACGATGAT ACTATCAGTT TACTGGATAG CGAATTAAAG
ATCAAAAGTA TGGAAGCTGA TTTAGAAAAA CTTCGGGATG AATACAAGGA AATGGAAACT
ATTTCTGATG CCTACTCGAC AAATGAGTTA AAAATGAAGA AGTTAGAATT GGACAACAAA
GAAATGGAGT ATCAAAACCT TCTCAAGAAG TATCAATTGG ACAAAAGCAA GGGCTTAGAC
CAAAATGAAC TACAAGTAAA AATGGCTAAA GAAGATTTAG AAGACACCAT CGTCTATGCA
CCTGTTTCCG GCGTTCTTTT AAATCTAGCC AATAAAGCTG GAGAAAGTCT CACTGACGAG
GACGACTTCG CAACCATCCA TGAAAACAAA ACTATTAAGG CGATAACAAA GGTCATTGAA
TACGACATTG GACAAATAAA AGTAGGACAA AAAGTTTATG TAAATGTAGA GGCGCTACCG
GATAAAAAAT TTACAGGGGT TGTCAGCAAG ATTAATGCTT TGCCTGAAGA AGATTCCAGT
GGATTGGTCA ACTATTCCGT AGAAATGACC ATTAAAGACC CGGGACCGGA ATTGAAGGAT
GGCATGACCT GTTCCGTTTC CTTTGTCTTA AAAGAAGTTG CCGATTGTTT AACTGTACCC
TATAAAGCTG TAAAAATGGT CAATGGCAAA CAAATGGTTA CGGTGGTGGA TGAAAAGGGC
CAACAAGTAG AGCGGCAGAT AAAAACGGGC TTTACCGATG GAACTAGCGT GGAAGTTCTG
GAAGGTCTTA AGAACGGTGA GACTGTTATT TATGCAAAAC CTATTACTAC CAAGACAAAT
GCTACCCAAC AAAAGACCAA TTCTACTAGC CAAACGAAAC GGGTGATTTT TTGA
|
|---|
| Protein sequence | MKIIRDWGLK EFIKQKSKKS LGIALIVAIA LTGGTTYWLQ RQSADKSSEP QYEQAQVKKE
DIIVGLDSDG TIDFSKVKLR FGVRGTIAEI LVAEGDEIQK GQIIARLDDR DYQDQYQLAL
AKLQDAQDDD TISLLDSELK IKSMEADLEK LRDEYKEMET ISDAYSTNEL KMKKLELDNK
EMEYQNLLKK YQLDKSKGLD QNELQVKMAK EDLEDTIVYA PVSGVLLNLA NKAGESLTDE
DDFATIHENK TIKAITKVIE YDIGQIKVGQ KVYVNVEALP DKKFTGVVSK INALPEEDSS
GLVNYSVEMT IKDPGPELKD GMTCSVSFVL KEVADCLTVP YKAVKMVNGK QMVTVVDEKG
QQVERQIKTG FTDGTSVEVL EGLKNGETVI YAKPITTKTN ATQQKTNSTS QTKRVIF
|
|---|
| |