Gene Dred_0215 details

Gene Information

• Locus tag: Dred_0215
• Symbol: rplC
• ID: 4955494
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfotomaculum reducens MI-1
• Kingdom: Bacteria
• Replicon accession: NC_009253
• Strand: +
• Start bp: 232169
• End bp: 232798
• Gene Length: 630 bp
• Protein Length: 209 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640179381
• Product: 50S ribosomal protein L3
• Protein accession: YP_001111589
• Protein GI: 134298093
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00000370606
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAAAG GTATTCTTGG CAAAAAGATT GGCATGACCC AAATCTTCAA CGAAGCTGGG 
GTTGCCATCC CCGTAACAGT TGTTGAAGCA GGCCCTTGCC TGGTAGTACA AAAAAGAACC 
CCCGAAAACG ATGGGTACAG TGCCATTCAG TTAGGCTTTG GTGTAAAGCG TGAGAATTTG 
CTGAACAAAC CCACCAAAGG TCACCTGAAT AAAGCGGGTG TTCGCCCGGT ACGTTTTCTG 
AGGGAACTAA AAGTTGATGA CCTCGAAGCT TTTCAAGTAG GTCAAGAGAT TAAAGCGGAC 
ATTTTCGCTG AGGGCGAAAA AGTAGACGTT GTAGGGACTT CTAAGGGTAA AGGTTTTGCT 
GGTGGGATCA AGCGTCACAA CTTCCACCGT GGACCCATGG CCCATGGTTC TAAGTATCAC 
CGTCGGCCCG GTTCCTCCGC AGCAAAAGGC CCTGCTCGTA CCTTTAAGGG TAGAAAACTT 
CCCGGTCACT ACGGGGTTGA ACGTGTAACC GTTCAAAACC TTCAAGTAGT TAAGGTTGAC 
CCCGAACGTA ACTTACTTGC TATTAAAGGT GCAGTACCCG GACCCCGGGG TGGCCTATTA 
CTGGTTAAGA ATAGCGTCAA AGTTAAGTAG 

 

Protein sequence

MPKGILGKKI GMTQIFNEAG VAIPVTVVEA GPCLVVQKRT PENDGYSAIQ LGFGVKRENL 
LNKPTKGHLN KAGVRPVRFL RELKVDDLEA FQVGQEIKAD IFAEGEKVDV VGTSKGKGFA 
GGIKRHNFHR GPMAHGSKYH RRPGSSAAKG PARTFKGRKL PGHYGVERVT VQNLQVVKVD 
PERNLLAIKG AVPGPRGGLL LVKNSVKVK