Gene Dred_0208 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0208 
Symbol 
ID4955409 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp223489 
End bp227046 
Gene Length3558 bp 
Protein Length1185 aa 
Translation table11 
GC content48% 
IMG OID640179374 
ProductDNA-directed RNA polymerase subunit beta' 
Protein accessionYP_001111582 
Protein GI134298086 
COG category[K] Transcription 
COG ID[COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit 
TIGRFAM ID[TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00134006 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTTAGAGC TAAATAACTT TGATAGTATA CGTATCGGCC TTGCCTCACC GGACAAGATT 
CGTCAATGGT CCAGTGGGGA GGTAAAAAAA CCGGAAACCA TCAACTACCG GACATTGAAG
CCAGAACGTG ACGGTTTATT CTGTGAACGT ATCTTTGGCC CCACCAGGGA TTGGGAATGT
CACTGCGGAA AGTACAAACG TGTCCGCTAC AAAGGCGTTG TCTGCGACCG CTGCGGTGTT
GAAGTAACCC GCTCCAAGGT TCGCCGAGAA AGGCTAGGAC ACATTGAACT GGCAGCCCCA
GTATCTCATA TTTGGTACTT TAAAGGGATT CCTAGCCGCA TGGGGTTGCT ACTGGATATG
TCACCCAGAG CATTGGAAAA AGTACTGTAT TTTGTTTCTT ACATTGTTAT CGAGCCGGGC
GATACTCCTC TGTTGAAAAA ACAGTTACTT ACTGAAACCG AGTATCGGGA ATATAGGGAT
AAATTTGGCA ATAATTTCAA GGCAGGCATG GGCGCTGAAG CCATTAAGGT CTTGCTGGTG
GAAATAAACC TGGAGGAATT GGCCAGGGAA CTGCGCCAGG AACTAAAGGA GGTTTCTGGC
CAGCGTAAGA TCCGTGCCAT ACGTCGGCTG GAAGTCGTAG AGGCCTTTAA GAAATCTGGC
AACCGACCAG AGTGGATGAT CATGGACGTA GTTCCAGTTA TTCCTCCAGA ACTAAGACCT
ATGGTACAGT TGGATGGTGG ACGTTTCGCT ACTTCGGATT TAAATGACCT TTATCGGCGG
GTTATTAACC GAAACAATCG TTTGAAACGC TTGCTTGATT TAGGCGCACC GGACATCATC
GTAAGAAACG AAAAGCGAAT GTTGCAGGAA GCTGTGGATG CTCTCATCGA TAATGGACGA
CGTGGCCGAC CTGTAACAGG CCCTGGCAAT CGTCCGTTAA AATCCCTGTC AGACATGCTA
AAGGGGAAAC AAGGACGCTT CCGCCAAAAC CTACTGGGTA AAAGGGTTGA CTACTCCGGT
CGTTCGGTTA TCGTAGTAGG ACCACGTTTA AAGATGCACC AATGCGGTTT GCCCAAGGAA
ATGGCACTGG AGCTCTTCAA ACCCTTTGTT ATGAAAAAGC TGGTCAATGA TGGCCATGCC
CATAACATTA AGAGTGCTAA GCGTATGGTA GAACGGGTAC GTCCGGAGGT ATGGGATGTT
CTTGAAGATG TGATTAAAGA ACATCCAGTT ATGCTAAACC GTGCCCCAAC CCTACACCGT
TTGGGTATTC AAGCCTTTGA GCCAGTTTTA GTAGAGGGTC GTGCCATTAA AATTCACCCC
ATGGTTTGTA CAGCCTATAA CGCGGATTTT GACGGTGACC AAATGGCAGT TCACGTACCG
CTGTCTGCTG AGGCTCAGGC AGAAGCTAGG CTTCTCATGC TGGCTGCTAA TAACATCCTG
AACCCCAAGG ACGGCAAGCC TGTGGCCAGT CCTACTCAGG ACATGGTATT GGGTTCCTAT
TACCTGACCA TGGACAGAGA TGGTGATTTA GGCGAGGGAC TGATCTTTAA AGATGAGCAG
GAGGCCATGC TGGCCTATGA TAACAAGCAA GTATCCTTAC AGGCTAAAAT TACCGTACGC
CGGAAAAATG GTGAGCGGTT ACAAACTACC GTTGGCAGGA TTATCTTCAA TGAGGTAATC
CCCGAGGAGT TAGGATACAT TAATAAAGTT TGCGACAAAA AGACACTAAG CAAAATTGTT
GCAGATTGCT ACCGCCGCCT TGGAAATGCT CATACTGCGG AACTACTGGA TGGCATTAAA
GAGCTGGGTT ATAAATATTC AACCCGGGCG GGCATCACCA TTGGGGTGCC GGATATTACT
ATTCCGGAAG CCAAGAAGGA GATTCTTGCC AAGGCTGAGG AGCAAGTTAA TAAGATCGAA
ACCCAATTCC GTCGGGGTCT GATTACGGAA GACGAGCGTT ACCGTAAAGT AATTGGTATC
TGGAATGACG CTACTGATAA AGTAACCAAA GCCTTGATGG CCACACTGGA TAAGTTTAAC
AATGTTTACA TGATGGCTAC CTCTGGTGCC CGTGGTAACA TCCAGCAGAT TCGTCAGCTG
GCCGGTATGC GTGGTCTAAT GGCAGACCCC TCCGGACGAA TTATTGACCT GCCAATTAAA
GCAAACTTCC GGGAAGGCTT AACCGTATTG GAATACTTTA TTTCCACCCA CGGTGCTCGG
AAAGGTTTGG CTGATACCGC CCTGCGTACG GCTGACTCCG GTTACTTGAC TCGCAGACTG
GTGGATGTGG CCCAGGACGT TATAGTACGG GAAGATGACT GTGGCACCAC CGAGGGAATT
GAAGTCAGAG AAATTAGAGA TGGTACCGAA GGTATTGAAA AACTCCATGA ACGTCTGGAA
GGCCGGGTAC CAATGGAAGT GGTTGTTCAC CCAGAAACAG GGGAAGTGCT CATTTCCCAG
GAGCAGGTAG ATAACCATCA AGTGATGACC GAAGAACAGG CCCAGGCCAT TGAAGACGCA
GGCATTGAAA AGGTAAAAAT TAGATCGGTT ATTACCTGCA AAACCCGCTA CGGTGTGTGT
AAACACTGCT ATGGTAAGAA CCTGGCAACA GGTGGCAACA TTGATATTGG TGAAGCCGTG
GGTATCATTG CAGCCCAGTC CATTGGTGAG CCTGGCACAC AGTTAACCAT GCGTACCTTC
CACACCGGTG GTGTAGCCGG AGATGATATT ACACAAGGTC TTCCGAGGGT TGAAGAACTG
TTTGAGGCCC GTAGACCTAA GGGTCAGGCC ATTGTGGCAG AAGAGGACGG CAGCATTGCT
ATACGGGAAG TAAAGGGTCG CAGGGAAATT GAAATCACCA AGGACAATGG TGAAAAGAAT
GTCTATGCCG TTCCCTTTGG CGCTAGAATC AAAGTAAAAG AAGGCCAGCG CATTGAGGCC
GGTGACGAAT TGACAGAGGG TTCCGTTAAC CCGCACGACC TCTTAAAGAT TAAGGGACCA
GCAGGAGTGC AAGTATATCT GCTGCAGGAA GTACAAAGGG TATATCGCCT GCAGGGTGTG
GAAATTAACG ACAAGCACAT CGAAGTTATG ATTCGTCAAA TGTTGAGAAA AGTGAAGATT
GAAGAAGCTG GTGATACAGA ATTACTACCC GGTGGCCTTA TTGATATTTT TGAATTTGAA
GAGGAAAATC GTAAGGCCGT TGAGCAAGGT GGAGAACCTG CTGTAGCCAA ACCGGTACTA
TTGGGTATTA CCAAGGCTTC TCTTGCCACA GATTCCTTCT TATCCGCAGC GTCCTTCCAA
GAGACCACTC GGGTACTAAC CGAAGCAGCT ATCAAAGGAA AGATGGACCC GCTGCTTGGT
CTCAAAGAAA ACGTTATTAT CGGTAAGCTG GTTCCGGCAG GTACAGGCAT GTCACGCTAT
CGCAATATAG AAGTGCTGGA AGAAGGTCAG CCATTCCTGG AGGAAGACAG GGATATACTG
CTTCCTGAAA GGGACCGGGA CTACAACTTC CTTTCAGATG AAGAGAAGAT TGATTTCGAC
CTGACACTTG AAAAATAA
 
Protein sequence
MLELNNFDSI RIGLASPDKI RQWSSGEVKK PETINYRTLK PERDGLFCER IFGPTRDWEC 
HCGKYKRVRY KGVVCDRCGV EVTRSKVRRE RLGHIELAAP VSHIWYFKGI PSRMGLLLDM
SPRALEKVLY FVSYIVIEPG DTPLLKKQLL TETEYREYRD KFGNNFKAGM GAEAIKVLLV
EINLEELARE LRQELKEVSG QRKIRAIRRL EVVEAFKKSG NRPEWMIMDV VPVIPPELRP
MVQLDGGRFA TSDLNDLYRR VINRNNRLKR LLDLGAPDII VRNEKRMLQE AVDALIDNGR
RGRPVTGPGN RPLKSLSDML KGKQGRFRQN LLGKRVDYSG RSVIVVGPRL KMHQCGLPKE
MALELFKPFV MKKLVNDGHA HNIKSAKRMV ERVRPEVWDV LEDVIKEHPV MLNRAPTLHR
LGIQAFEPVL VEGRAIKIHP MVCTAYNADF DGDQMAVHVP LSAEAQAEAR LLMLAANNIL
NPKDGKPVAS PTQDMVLGSY YLTMDRDGDL GEGLIFKDEQ EAMLAYDNKQ VSLQAKITVR
RKNGERLQTT VGRIIFNEVI PEELGYINKV CDKKTLSKIV ADCYRRLGNA HTAELLDGIK
ELGYKYSTRA GITIGVPDIT IPEAKKEILA KAEEQVNKIE TQFRRGLITE DERYRKVIGI
WNDATDKVTK ALMATLDKFN NVYMMATSGA RGNIQQIRQL AGMRGLMADP SGRIIDLPIK
ANFREGLTVL EYFISTHGAR KGLADTALRT ADSGYLTRRL VDVAQDVIVR EDDCGTTEGI
EVREIRDGTE GIEKLHERLE GRVPMEVVVH PETGEVLISQ EQVDNHQVMT EEQAQAIEDA
GIEKVKIRSV ITCKTRYGVC KHCYGKNLAT GGNIDIGEAV GIIAAQSIGE PGTQLTMRTF
HTGGVAGDDI TQGLPRVEEL FEARRPKGQA IVAEEDGSIA IREVKGRREI EITKDNGEKN
VYAVPFGARI KVKEGQRIEA GDELTEGSVN PHDLLKIKGP AGVQVYLLQE VQRVYRLQGV
EINDKHIEVM IRQMLRKVKI EEAGDTELLP GGLIDIFEFE EENRKAVEQG GEPAVAKPVL
LGITKASLAT DSFLSAASFQ ETTRVLTEAA IKGKMDPLLG LKENVIIGKL VPAGTGMSRY
RNIEVLEEGQ PFLEEDRDIL LPERDRDYNF LSDEEKIDFD LTLEK