| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0207 |
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| Symbol | rpoB |
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| ID | 4955806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 219996 |
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| End bp | 223433 |
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| Gene Length | 3438 bp |
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| Protein Length | 1145 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640179373 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001111581 |
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| Protein GI | 134298085 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000841151 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTACC CGGAAAAAGT AGGAAACAGG GTGAGGTGGA ACTACGGCAA ACTTCGTGAA
GTCCTGGATT TGCCTAACCT GATTGAAGTT CAGCGAAATT CATACGAATG GTTCCTCCAG
GAAGGTCTGA GGGAAGTATT CCATGACATC TCTCCTATTC AGGACTTTAC TGGAAACCTG
ATTCTGGAAT TCCTGGACTA CACTCTGGGA GAACCGAAAT ATTCGGTAGA AGAGTGCAAG
GAACGCGATG TAACTTATGC GGCCCCGTTA CGGGTTAAGG TGCGCCTTAT TAATAAGGAA
ACAGGGGAAG TAAAAGAACA AGAAGTCTTT ATGGGAGACT TTCCTTTAAT GACCAGCAAA
GGCACCTTTA TTATTAACGG TGCAGAACGC GTTATTGTAA GCCAGTTGGT ACGTTCTCCG
GGAGTCTATT TTGCTGACCA AATAGACCCC AGTGGGAAAA GATTATTTGC TACCACAATG
ATTCCTAACC GTGGAGCATG GTTAGAATTT GAAACAGATG TCAATGACCA TATTTTCGTT
CGTATTGACC GCACCCGTAA GATTCCGGCA ACTGTGTTAA TTCGGGCTTT GGGCTATGGC
TCAAATGCCT TAATCATGGA ACTGTTTGAA AATGACAAAT TTGTTCAAGA GACACTAACC
CGTGATAACA CAGACACTGA GGAAGAAGCA CTGGTTGAAA TTTATAAGCG TCTTCGTCCG
GGGGAACCTC CTACGGTAGA AAGTGCGAGG TCTCTATTAA ATACATTATT CTTTGATCCT
AAACGATATG ACCTTGCCCA TGTGGGACGT TATAAATTAC AAAAGAAATT AAAGCACGGC
ATCCTTTACC GTTATCCCAA CGGTGAAGAA GGCCCCAAAG AATGGGACCG CCTATTAAAT
AAAGAAGTAC CGGTGGATCG GGAATTTATC CGTGAATTAA CCAAAGAAGA TATTATTGCA
ACCTTCCGTT ATCTTTTGAA CTTAATGCAG GGTGAAGGTA TTGTGGATGA TATTGACCAC
TTAGGTAACC GCCGATTACG TTCCGTGGGT GAGTTGTTAC AAAACCAGTT CAGAATTGGT
TTATCTCGTA TGGAACGGGT TGTCCGGGAA AGAATGACGA TTCAGGATGT AGATGTAATA
ACTCCACAAG TATTAATAAA CATTCGCCCG GTTGTGGCAT CCATTAAAGA GTTCTTTGGC
TCCAGCCAAT TGTCTCAGTT TATGGACCAA ACTAACCCAC TGGCGGAATT AACCCACAAA
AGACGTCTGT CAGCCTTAGG TCCTGGGGGG TTATCCAGGG AGCGTGCGGG CTTCGAAGTG
CGTGACGTTC ACCACTCTCA CTATGGCCGT ATGTGTCCCA TTGAGACACC GGAAGGTCCC
AACATTGGTT TGATTGGTTC ACTGTCTACC TATGCTAGGA TTAATAGCTT TGGCTTTATG
GAAGCACCCT ATCGTAAAGT AGATAAAGAA AACAAACGTG TAACCGATGA AATTGTTTAT
TTAACGGCAG ATGAAGAAGA AGACCATATT ATAGCCCAGG CTAACGCTCC TCTTGACGAA
AATGGTTATT TTGTAGAAGA AAGAGTAAAT GCCCGCCGGG GTCATGATAC CCTTCTGGTA
CCCACTGACC GTGTAGAATA CATGGACGTA TCTCCTAAAC AAGTATTTTC CGTAGCAACG
TCCTTAATTC CCTTCTTGGA ACATGACGAT GCGAACCGCG CCTTGATGGG CGCAAACATG
CAACGTCAGG CGGTACCTCT GCTCAGGTGT CAGGCACCCG TGGTGGGTAC GGGTATAGAA
CACAGGGCTG CTAAGGATTC TGGTGTATGT ATAGTAGCAG AGAGAGGCGG AGAAGTTGTT
CGGGTGACCG CCACTGAAGT TGCTGTACGT ACTGACGAGG GAAGGACAGA CACCTATAAA
CTCTTAAAGT TTACTCGTTC CAACCAGGGT ACCTGCATTA ACCAAAAGCC CATTGTCAAT
AAAGGAGACA GAGTGGAGGA AGGCCAAATC CTTGCGGATG GGCCAGCCAC TGAACAAGGC
GAATTAGCTT TGGGAAGAAA TATCCTGGTA GCTTTTATGA CCTGGGAAGG TAACAACTAC
GAGGATGCCA TTCTGATCAG CGAAAAGGCT GTAAAAGAAG ATTTTTTCAC CTCGATCCAT
ATAGAAGAAT ATGAGTGTGA TGCCAGGGAT ACCAAACTTG GTCCCGAAGA GATCACCCGG
GATATTCCCA ATGTGGGCGA AGATATTTTA AAAGATCTGG ATGAAAGAGG AATTATCCGG
GTGGGCGCTG AGGTAAGACC CGGTGATATT CTAGTAGGAA AAGTAACACC CAAGGGTGAA
ACAGAACTAA CCGCAGAGGA ACGATTGCTC CGGGCGATCT TTGGTGAGAA GGCCAGAGAG
GTAAGAGATA CCTCCCTCAG AGTACCCCAC GGGGAAGCCG GAAAAATTGT TGATGTTAAG
GTGTTCTCTC GGGAGAATGG CGATGAACTG CCACCAGGCG TAAACCATTT AGTACGGTGT
TACATTGCCC AGAAGAGAAA GATTTCTGAG GGTGACAAAA TGGCCGGTCG TCACGGTAAC
AAAGGGGTAG TGGCTCGGAT CTTGCCCGAA GAAGATATGC CCTTTATGGC GGATGGAACT
CCGGTACAAA TTGTACTGAA CCCATTGGGT GTACCGTCCC GTATGAACAT CGGTCAGGTT
TTAGAAACTC ACCTAGGTTG GGCTGCTAAA ACACTAGGGT TCAATGTAGC AACACCGGTA
TTTAACGGCG CATCTGAAGA ATCTATCTGG GAAACCCTGA GACGTGCTGA ACTACCCGAA
GACGGAAAAA CTGTTCTCTA CGATGGTAGA ACCGGGGAAC CCTTTGATAA TAGGGTCACC
GTTGGATATA TCTACATGAT AAAACTGCAC CACCTGGTGG ATGACAAGAT TCACGCCCGG
TCCACTGGTC CATACTCTTT GGTCACCCAG CAACCTCTGG GCGGTAAGGC TCAGTTTGGT
GGACAGCGTT TTGGTGAGAT GGAGGTATGG GCGCTGGAGG CTTACGGTGC AGCCTATACG
CTTCAAGAGA TTCTTACCGT TAAGTCCGAC GATGTAGTGG GTCGGGTTAA GACCTATGAA
GCCATTGTAA AGGGAGAAAA TGTACCTGAA CCAGGGGTTC CGGAGTCCTT CAAGGTACTA
ATCAAGGAAC TGCAGTCCCT TGGATTAGAC GTCAAGGTGC TCGCTGAAGA TGAGAAGGAA
ATTGAAATCA AGGAAATTGA AGAGGATATA ACTGAAACCG CAAAAGAACT GGGGATTGAA
CTACCCGAAG AAAGAAGGGT AAGCTCTTCC AAAGAAGAAA TTGAAGAGGA AGAGGAAGTT
GAAGATAATT CTGACGAATT TGATGAAACT TTCCTGGAAG AAGCTGAAGA CGACTTCAGT
TTGGATGACG AGGACTAA
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| Protein sequence | MAYPEKVGNR VRWNYGKLRE VLDLPNLIEV QRNSYEWFLQ EGLREVFHDI SPIQDFTGNL
ILEFLDYTLG EPKYSVEECK ERDVTYAAPL RVKVRLINKE TGEVKEQEVF MGDFPLMTSK
GTFIINGAER VIVSQLVRSP GVYFADQIDP SGKRLFATTM IPNRGAWLEF ETDVNDHIFV
RIDRTRKIPA TVLIRALGYG SNALIMELFE NDKFVQETLT RDNTDTEEEA LVEIYKRLRP
GEPPTVESAR SLLNTLFFDP KRYDLAHVGR YKLQKKLKHG ILYRYPNGEE GPKEWDRLLN
KEVPVDREFI RELTKEDIIA TFRYLLNLMQ GEGIVDDIDH LGNRRLRSVG ELLQNQFRIG
LSRMERVVRE RMTIQDVDVI TPQVLINIRP VVASIKEFFG SSQLSQFMDQ TNPLAELTHK
RRLSALGPGG LSRERAGFEV RDVHHSHYGR MCPIETPEGP NIGLIGSLST YARINSFGFM
EAPYRKVDKE NKRVTDEIVY LTADEEEDHI IAQANAPLDE NGYFVEERVN ARRGHDTLLV
PTDRVEYMDV SPKQVFSVAT SLIPFLEHDD ANRALMGANM QRQAVPLLRC QAPVVGTGIE
HRAAKDSGVC IVAERGGEVV RVTATEVAVR TDEGRTDTYK LLKFTRSNQG TCINQKPIVN
KGDRVEEGQI LADGPATEQG ELALGRNILV AFMTWEGNNY EDAILISEKA VKEDFFTSIH
IEEYECDARD TKLGPEEITR DIPNVGEDIL KDLDERGIIR VGAEVRPGDI LVGKVTPKGE
TELTAEERLL RAIFGEKARE VRDTSLRVPH GEAGKIVDVK VFSRENGDEL PPGVNHLVRC
YIAQKRKISE GDKMAGRHGN KGVVARILPE EDMPFMADGT PVQIVLNPLG VPSRMNIGQV
LETHLGWAAK TLGFNVATPV FNGASEESIW ETLRRAELPE DGKTVLYDGR TGEPFDNRVT
VGYIYMIKLH HLVDDKIHAR STGPYSLVTQ QPLGGKAQFG GQRFGEMEVW ALEAYGAAYT
LQEILTVKSD DVVGRVKTYE AIVKGENVPE PGVPESFKVL IKELQSLGLD VKVLAEDEKE
IEIKEIEEDI TETAKELGIE LPEERRVSSS KEEIEEEEEV EDNSDEFDET FLEEAEDDFS
LDDED
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