| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0113 |
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| Symbol | |
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| ID | 4958538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 120469 |
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| End bp | 121029 |
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| Gene Length | 561 bp |
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| Protein Length | 186 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640179267 |
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| Product | AbrB family transcriptional regulator |
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| Protein accession | YP_001111488 |
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| Protein GI | 134297992 |
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| COG category | [K] Transcription |
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| COG ID | [COG2002] Regulators of stationary/sporulation gene expression |
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| TIGRFAM ID | [TIGR01439] looped-hinge helix DNA binding domain, AbrB family
[TIGR02851] stage V sporulation protein T |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000111816 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAGCAA CGGGTATTGT TCGTCGTATT GACGATTTAG GACGAGTGGT TATACCAAAA
GAAATTAGAA GAACCCTAAG GATTCGTGAA GGTGACCCCC TTGAAATTTT TGTCGATCGG
GAAGGTGAAG TAATCCTCAA AAAATATTCA CCCATCGGAG AATTAGGTGA TTTCGCAAAA
GAGTACGCAG ATTCGTTATA TGAAGCCCTC GGCCATATTG CCTGTATTGC AGACCGAGAT
ACTATCATTG CCGTGGCTGG GGCTCCGAAA AAAGAATTTA TTAATAAGCC CATTGGTCCC
AATGTAGAAA AAGTAATGGA AGATCGCAAA GCGGTGGTTA TTAATACCCC GGGTAACGAT
CCACATTGTA AAGAATGCGG CATCACTGAG GACGGCGAGT GTAAATACTC TTCGGAAGTT
ATTGCACCGA TTATCTCTGA AGGTGATCCA ATTGGAGCGG TTATCCTAGC CTCCAAAGAT
CCCGATGTTA AAATGGGAGA AATGGAACTT AAATTGGCTG AAACTGCTGC TGGTTTTCTT
GCTAAACAAA TGGAACAATA A
|
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| Protein sequence | MKATGIVRRI DDLGRVVIPK EIRRTLRIRE GDPLEIFVDR EGEVILKKYS PIGELGDFAK
EYADSLYEAL GHIACIADRD TIIAVAGAPK KEFINKPIGP NVEKVMEDRK AVVINTPGND
PHCKECGITE DGECKYSSEV IAPIISEGDP IGAVILASKD PDVKMGEMEL KLAETAAGFL
AKQMEQ
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