Gene Dred_0082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0082 
Symbol 
ID4956729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp88299 
End bp90002 
Gene Length1704 bp 
Protein Length567 aa 
Translation table11 
GC content43% 
IMG OID640179236 
Productpeptidoglycan-binding LysM 
Protein accessionYP_001111457 
Protein GI134297961 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTCATGA GAAAAAGGCC CAAGCTAAAA TTCCGGCAAA ATAATGATGA AAACGAAAAT 
CAACAATTTG AAACTGAAAG AATCAGGGTC AAACAACTCA TAGGCGAAAA TACCGAACAA
ACTGTTATCC GTGATACCGT AAAGCTGCCC TATGGCTACC CGGATATTGA GGAAATCCTT
TCTATTGACA CAAAGGTTAA GTTAAAAAAA GCTGAGATTA TCCCCAATAA GGTGATTGTA
GAAGGAAAGC TTCGCTTCAA AGTTTTATAC ACCGCCTTTG AAAAGGATCA ATCTGTACAC
GCGTTTGACG AAGAAATTGA GTTTACCGAT TTTATTGAGG TAGAGGGTGC TCGGCCGGGC
ATGGATGCTG AGATTGAGTT TGTGGTTGAG GACTTTAGCC TAAAACTAAG CCGCTCCTGC
GAGTATGATT TGACTGCTGT ACTGCAGATT ACTGCAAAGA TTACCGAGGA CCGTGAAGTT
GATGCCATTA TTGAATGTCC CATGGGTTAT AACTGTGAAA CTGAAAGAAT GAGCCTAGAG
CAAGTAGTGG GCAGCAACAC CAAACAAATT CTGATTGATG ATGAGTTTGA ACTACCGGAT
GAAAGAGATT TCCTTGTTAG CGATGTTCTT AAGTGTATGT GTGATGTAGA AATAACCAAG
GTTAGAGTTA TTAAAAATAA GATACTTTTT GATGGCGAAG TGGATATGGA ATGCCTCTAT
GCCGTTGAGA GAAGGGCTGA CAAGGGAAAA CATGGGCACG GGGAATGGCA TGCGGATAAA
AAAGGGCATG GGTTTGAAGA TCCCAAGGAG GATAAGTTTG GTGTTCATTC CTTTGAGAGA
ACTTTTAAGT TTAGTAATTT TATAGAAGTT GAGGGCGCCG AACAGGGGAT GGAAGCCTAT
GTGGATGCCA TGGTGGAATC CTGTAGCCTG GATATTACAG ACGTAAGCGA TTGCAAGTTT
TCCCCCCTCA TTGTACTAAA AATTAAAGCT CGTGTGGTAG AAGATCGGGA AGTGGATGTT
GTTACAGATA TTGAGGGGGC AGACGTTGAT ACTGTAACAC TGGATATGGA AAGTCTAGTG
GCTGAAGAGT GTAAACAGGT TATCATTCGG GATGCCAAAG AAACCCCTGC TGGAAAACCT
GATGTGGATA AGGTGCGGGA AATTACAGTC GGGGATGTTG TAATCAAGGA TGTAGATGTC
ATTCAGGATA AGGTTCTAAT TAAGGGCACC GTTGAGTTTG AAATTCTTTA CATTGCCATG
AATGAAAGAA AATCTTTGCA TACTATTCAC AGGAAAGTTG ATTTTAAAAC TTTTATTGAT
GTACCTGGGG CCCGTCCGGA AAATGAAGCT GACATTGATG TAGAGGTTGA ATGGGCTAAT
GTAAAATTGG AAAAAGACTG TGAACTCCTG ATAGAAGCGG TACTAAAAGT ATGTGCAAGG
GTAACAGAAA CCGTCGAGCA AGACGTGGTC ATTGGCTTTA CACCCAGGCC CACCGTACCA
CCTACCACAT TGCCTCCCAC CACAACCTGT GTTCCGGGCA CAACCTTTAA CTACACCATT
GCCAAGGGGG ATACCCTAAG CAAACTGGCC CAGCGTTATG GTACTACGGT GCAAGCCATT
CAAGCAGCTA ATCCGGAAAT CACAAATCCC AATATGCTCA ATGTTGGGGA TGTTATTAAA
ATTCCTTGCG TAGCCAAGGG TTAA
 
Protein sequence
MVMRKRPKLK FRQNNDENEN QQFETERIRV KQLIGENTEQ TVIRDTVKLP YGYPDIEEIL 
SIDTKVKLKK AEIIPNKVIV EGKLRFKVLY TAFEKDQSVH AFDEEIEFTD FIEVEGARPG
MDAEIEFVVE DFSLKLSRSC EYDLTAVLQI TAKITEDREV DAIIECPMGY NCETERMSLE
QVVGSNTKQI LIDDEFELPD ERDFLVSDVL KCMCDVEITK VRVIKNKILF DGEVDMECLY
AVERRADKGK HGHGEWHADK KGHGFEDPKE DKFGVHSFER TFKFSNFIEV EGAEQGMEAY
VDAMVESCSL DITDVSDCKF SPLIVLKIKA RVVEDREVDV VTDIEGADVD TVTLDMESLV
AEECKQVIIR DAKETPAGKP DVDKVREITV GDVVIKDVDV IQDKVLIKGT VEFEILYIAM
NERKSLHTIH RKVDFKTFID VPGARPENEA DIDVEVEWAN VKLEKDCELL IEAVLKVCAR
VTETVEQDVV IGFTPRPTVP PTTLPPTTTC VPGTTFNYTI AKGDTLSKLA QRYGTTVQAI
QAANPEITNP NMLNVGDVIK IPCVAKG