Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dred_0082 |
Symbol | |
ID | 4956729 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfotomaculum reducens MI-1 |
Kingdom | Bacteria |
Replicon accession | NC_009253 |
Strand | + |
Start bp | 88299 |
End bp | 90002 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640179236 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001111457 |
Protein GI | 134297961 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTCATGA GAAAAAGGCC CAAGCTAAAA TTCCGGCAAA ATAATGATGA AAACGAAAAT CAACAATTTG AAACTGAAAG AATCAGGGTC AAACAACTCA TAGGCGAAAA TACCGAACAA ACTGTTATCC GTGATACCGT AAAGCTGCCC TATGGCTACC CGGATATTGA GGAAATCCTT TCTATTGACA CAAAGGTTAA GTTAAAAAAA GCTGAGATTA TCCCCAATAA GGTGATTGTA GAAGGAAAGC TTCGCTTCAA AGTTTTATAC ACCGCCTTTG AAAAGGATCA ATCTGTACAC GCGTTTGACG AAGAAATTGA GTTTACCGAT TTTATTGAGG TAGAGGGTGC TCGGCCGGGC ATGGATGCTG AGATTGAGTT TGTGGTTGAG GACTTTAGCC TAAAACTAAG CCGCTCCTGC GAGTATGATT TGACTGCTGT ACTGCAGATT ACTGCAAAGA TTACCGAGGA CCGTGAAGTT GATGCCATTA TTGAATGTCC CATGGGTTAT AACTGTGAAA CTGAAAGAAT GAGCCTAGAG CAAGTAGTGG GCAGCAACAC CAAACAAATT CTGATTGATG ATGAGTTTGA ACTACCGGAT GAAAGAGATT TCCTTGTTAG CGATGTTCTT AAGTGTATGT GTGATGTAGA AATAACCAAG GTTAGAGTTA TTAAAAATAA GATACTTTTT GATGGCGAAG TGGATATGGA ATGCCTCTAT GCCGTTGAGA GAAGGGCTGA CAAGGGAAAA CATGGGCACG GGGAATGGCA TGCGGATAAA AAAGGGCATG GGTTTGAAGA TCCCAAGGAG GATAAGTTTG GTGTTCATTC CTTTGAGAGA ACTTTTAAGT TTAGTAATTT TATAGAAGTT GAGGGCGCCG AACAGGGGAT GGAAGCCTAT GTGGATGCCA TGGTGGAATC CTGTAGCCTG GATATTACAG ACGTAAGCGA TTGCAAGTTT TCCCCCCTCA TTGTACTAAA AATTAAAGCT CGTGTGGTAG AAGATCGGGA AGTGGATGTT GTTACAGATA TTGAGGGGGC AGACGTTGAT ACTGTAACAC TGGATATGGA AAGTCTAGTG GCTGAAGAGT GTAAACAGGT TATCATTCGG GATGCCAAAG AAACCCCTGC TGGAAAACCT GATGTGGATA AGGTGCGGGA AATTACAGTC GGGGATGTTG TAATCAAGGA TGTAGATGTC ATTCAGGATA AGGTTCTAAT TAAGGGCACC GTTGAGTTTG AAATTCTTTA CATTGCCATG AATGAAAGAA AATCTTTGCA TACTATTCAC AGGAAAGTTG ATTTTAAAAC TTTTATTGAT GTACCTGGGG CCCGTCCGGA AAATGAAGCT GACATTGATG TAGAGGTTGA ATGGGCTAAT GTAAAATTGG AAAAAGACTG TGAACTCCTG ATAGAAGCGG TACTAAAAGT ATGTGCAAGG GTAACAGAAA CCGTCGAGCA AGACGTGGTC ATTGGCTTTA CACCCAGGCC CACCGTACCA CCTACCACAT TGCCTCCCAC CACAACCTGT GTTCCGGGCA CAACCTTTAA CTACACCATT GCCAAGGGGG ATACCCTAAG CAAACTGGCC CAGCGTTATG GTACTACGGT GCAAGCCATT CAAGCAGCTA ATCCGGAAAT CACAAATCCC AATATGCTCA ATGTTGGGGA TGTTATTAAA ATTCCTTGCG TAGCCAAGGG TTAA
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Protein sequence | MVMRKRPKLK FRQNNDENEN QQFETERIRV KQLIGENTEQ TVIRDTVKLP YGYPDIEEIL SIDTKVKLKK AEIIPNKVIV EGKLRFKVLY TAFEKDQSVH AFDEEIEFTD FIEVEGARPG MDAEIEFVVE DFSLKLSRSC EYDLTAVLQI TAKITEDREV DAIIECPMGY NCETERMSLE QVVGSNTKQI LIDDEFELPD ERDFLVSDVL KCMCDVEITK VRVIKNKILF DGEVDMECLY AVERRADKGK HGHGEWHADK KGHGFEDPKE DKFGVHSFER TFKFSNFIEV EGAEQGMEAY VDAMVESCSL DITDVSDCKF SPLIVLKIKA RVVEDREVDV VTDIEGADVD TVTLDMESLV AEECKQVIIR DAKETPAGKP DVDKVREITV GDVVIKDVDV IQDKVLIKGT VEFEILYIAM NERKSLHTIH RKVDFKTFID VPGARPENEA DIDVEVEWAN VKLEKDCELL IEAVLKVCAR VTETVEQDVV IGFTPRPTVP PTTLPPTTTC VPGTTFNYTI AKGDTLSKLA QRYGTTVQAI QAANPEITNP NMLNVGDVIK IPCVAKG
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