Gene Dred_0076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0076 
Symbol 
ID4956693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp82393 
End bp83040 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content45% 
IMG OID640179230 
Productthiamine-phosphate pyrophosphorylase 
Protein accessionYP_001111451 
Protein GI134297955 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0352] Thiamine monophosphate synthase 
TIGRFAM ID[TIGR00693] thiamine-phosphate pyrophosphorylase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0077197 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCCGACA AAAGGCAGGT TCAGGAACTT TTCAACACAG GTCTCTATGG GATTACCGCT 
GAAGAATATT CCCTGGGTAG AAGCAATTAT GCAGTGATTA AGGCTATGAT TAATGCAGGG
ATAAAGGTCA TACAGTACAG AGAGAAGGAA AAGAAGCTGC GGGAAAAGTA CCAGGAATGC
CTGGATATAA GGAAATTAAC GCAGCAAGCT GGAGTAACCT TCATAGTAAA TGACCACATT
GATTTGGCAT TAATGGTAGG TGCCGATGGT GTACACATTG GACAAGATGA TTTACCACCG
GAAAAGGTTC GTCAACTGGT GGGGGAAAAA ATGATTATTG GTCTTTCCAC CCATTCTCCA
CTTCAGGCCC AGGCAGCGTT GGCAGCGGGT GTGGACTATA TCGGAGTGGG GCCCATATTT
GCTACCCGGA CCAAAAAGGA TGTTTGCCAA CCGGTGGGGT TGGAGTATCT GGAGTATGTT
GTTAAAAATA TTCCCCTTCC CTTTGTGGCC ATTGGTGGTA TAAAAGAACA CAATCTATCC
GAGGTGTCTA AACGTGGGGC CCAATGTGCG GCCCTGGTAA CAGAAATTGT AGGGGCAAAG
GATATTGTTG AGAAAGTGCA TTCCCTTAGG AAAAGAATAA ATATCTAA
 
Protein sequence
MADKRQVQEL FNTGLYGITA EEYSLGRSNY AVIKAMINAG IKVIQYREKE KKLREKYQEC 
LDIRKLTQQA GVTFIVNDHI DLALMVGADG VHIGQDDLPP EKVRQLVGEK MIIGLSTHSP
LQAQAALAAG VDYIGVGPIF ATRTKKDVCQ PVGLEYLEYV VKNIPLPFVA IGGIKEHNLS
EVSKRGAQCA ALVTEIVGAK DIVEKVHSLR KRINI