Gene Dred_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0002 
Symbol 
ID4955700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp1923 
End bp3020 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content39% 
IMG OID640179145 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_001111379 
Protein GI134297883 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.610199 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATAA TCTGTACCCG TCAAAATCTA ATTCAAGGCG TGACTACTGC TCAAAGGGCA 
GTATCTGCCA AAAACCCTCT GCCCATCCTA TCTGGTATTT TGTTAACAGC TAAAGATAAT
AAACTTAAGC TGCAAGCAAC TGACCTGGAA ATGGGTATTC AATGTGTTGT TCCTTGCACA
ACACAAGAAG AGGGTTCTAT TGTATTGCCC GCCAAATATT TAAGTGAAAT AGTAAGAAGA
TTACCCGATT CTCCGATACA AATTGAATCA AATCAAGGTA CAAACGTAAT AATTCGCTAT
GGGCAATCTG AAATTACAAT TAATGGTTTT GACGCAGAGG AATTCCCTAC TTTTCCTAAA
CCACAAAGCA AGAATTCCTT AACCATTCCT GAAGAAGAAT TAAAAGAATA CTTACGACAG
ATTCTCTTTG CCACCTTATC AGATGAAAAC AGACCAGTAT TTACCGGTGT TTTGATGGAA
ATTTTAAATG GGACACTAAG ATTAGTGACA ACAGATACGC ACCGTCTTGC CATGCGAGAA
ATAAAGGATT CATCCGTTGA TAATGATATA AACATTATTA TCCCTGGTAA AACTCTTAAT
GAACTGACCA GGGTAATTGG TGCTGCTGAT CAACAAGTCA CCATTTCGCT AGGTGAAAAC
CAAATAATTT TTGGGATGGA GGATACCCTA CTAATATCAA GACTTATTGA AGGTCAATTT
CCTAATTACC GTCAGGTTAT TCCCCAGGGA CACAAAACAA GGATTCGACT TAAAACAAAG
GATTTGCTAG AGGCCTCAGA AAGGGCATCT TTGTTGGCCC GAGTGGGCAC GCAAATTATT
CGTTTAAACA TTGAAGAAGA AAAAATAATT CTCACTGCCA ATACTGAAGT AGGTAGGATT
CACGAAGAGG TACCTGTTTA TTTACAAGGA GAATCTCTCC AAATTTCCTT TAATGCCATG
TACCTAATTG ATGCGCTTCG GGCAATCGGC AGTGATAATA TATATTTTGA TCTGTCGGGT
CCCCTCAGCC CAGGCATATT AAGACCTGTT GAGGGTGATG ATTACCTCTC ATTGATATTA
CCAGTACGAA CAACTTAA
 
Protein sequence
MKIICTRQNL IQGVTTAQRA VSAKNPLPIL SGILLTAKDN KLKLQATDLE MGIQCVVPCT 
TQEEGSIVLP AKYLSEIVRR LPDSPIQIES NQGTNVIIRY GQSEITINGF DAEEFPTFPK
PQSKNSLTIP EEELKEYLRQ ILFATLSDEN RPVFTGVLME ILNGTLRLVT TDTHRLAMRE
IKDSSVDNDI NIIIPGKTLN ELTRVIGAAD QQVTISLGEN QIIFGMEDTL LISRLIEGQF
PNYRQVIPQG HKTRIRLKTK DLLEASERAS LLARVGTQII RLNIEEEKII LTANTEVGRI
HEEVPVYLQG ESLQISFNAM YLIDALRAIG SDNIYFDLSG PLSPGILRPV EGDDYLSLIL
PVRTT