Gene SNSL254_pSN254_0188 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_pSN254_0188 
SymboltraH 
ID4929540 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_009140 
Strand
Start bp166376 
End bp167809 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content50% 
IMG OID642572485 
Producttype IV conjugative transfer system protein TraH 
Protein accessionYP_001102060 
Protein GI134047117 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.0000939253 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTCACGC ACAAGACATT AAAAAGGAGC CTGCTTGCCC TGAGTGTGGC GGCCAGTCTC 
GTCATGGCAC CGACAGGGGC GATAGCCGCT AACGGCCTCC AATCACAGAT GGACAAACTC
TTCAATGAAA TGAGCAACAC AACACCACCT GGGGTTTATG AAAGCCAACG ACGTGGCGTT
TTAGCTGGTG GCCGGTTCAC TGCAAAGACA CGAATCTTCG ACGAGAACCT GGTGAGCTTT
GCCCCTCCAT CATGGAAAGC TGGTTGCGGT GGTGTAGATC TGTTCGGCGG TTCGCTTTCC
TTCATTAACG CGGATCAAAT TGTCCAACTC CTTCGGGCTG TAGCAGCCAA CGCCAAGGGC
TATGCCTTCC AGCTTGCGCT CGATAACGTT TTCCCGGACG GAGCGAAGTG GATAGAGAAC
TTCCAGAAGA AAGTGCAAGC GCTCAACCAA CATCTGGGCA ACTCCTGCCA GCTCGCTCAA
GGTTTCGTGA ACGACCTAAC CAGCGGCATG GACCTTAAAC ACAAAACTGA TGCTTCTATA
ACCGCGACAA CTTCCGGCCT GTATGAAGAC TTCTTCGGGT CCAAGCAGGA AACCAGCGGC
AAGAGTCCTC TGGAAGAACT GAAAGCCAAC AAACCTGACG AATACAACAA GATGATTGGC
AACATCGTCT GGAAGCAACT CAAGAGCAAC AACGCCAACA CCTGGTTCCA GTACGGGGAT
AACACCCTTC TTGAAGCGAT CATGTCTTTA ACCGGCACAG TCATCATTGG TGATCTGGTA
AACGACCCGA ACTCAACCGG CACTGGTGCG AAAACAACCC CTCTGACGAC CCTACCAGGT
AACAAGATCA CCTTGTCAGA CCTGATTTCA GGCGGTTCTG TTGAGATCTA TTCCTGTGAT
TCTGATACGA CCAACTGCCT GAGTGCTGGC TCCAGCAATA AAACTGTCGT GCTCAAAGGT
ATCAAGAACC AGATCACCGA TATGCTGTTA GGAACAAGCT CTACACCTGG TGTGATCTAC
AAATACGCAA CGAACTCTGG AACCTTAACC GACCCAGAAA AGGCCTTTGT TTCTAACCTC
CCCGGAGGGA TTGGCACCAT TGTTCGTAAC TTGTCTGTCC TTTCACAGGA CGGCGCTAAC
CTGTTCGCAA CAGAGTCATC AGGAGCGATA GCCCTGACCA TGATGTATAG CTTCTCGGAA
GAGTTCTTCC GCGCAGCTCG CATTGCGATG GCTAACAGCA AATCACCCTA CAAGAAAGAG
GCACTAGAGC TTCTCGCGCA ATCGCAACAG CAAATCCGTG CTGAATACAC AATCCTGTCC
TCTCAATACG GCGATCTGGC AAGCCAAATT GAGAAATACA ACAACCTACT GGACAACATC
CGCAAGCAAA AATACATGCT GGCAACTTTG TCCAATCCTC CTAGCACGAA CTAA
 
Protein sequence
MVTHKTLKRS LLALSVAASL VMAPTGAIAA NGLQSQMDKL FNEMSNTTPP GVYESQRRGV 
LAGGRFTAKT RIFDENLVSF APPSWKAGCG GVDLFGGSLS FINADQIVQL LRAVAANAKG
YAFQLALDNV FPDGAKWIEN FQKKVQALNQ HLGNSCQLAQ GFVNDLTSGM DLKHKTDASI
TATTSGLYED FFGSKQETSG KSPLEELKAN KPDEYNKMIG NIVWKQLKSN NANTWFQYGD
NTLLEAIMSL TGTVIIGDLV NDPNSTGTGA KTTPLTTLPG NKITLSDLIS GGSVEIYSCD
SDTTNCLSAG SSNKTVVLKG IKNQITDMLL GTSSTPGVIY KYATNSGTLT DPEKAFVSNL
PGGIGTIVRN LSVLSQDGAN LFATESSGAI ALTMMYSFSE EFFRAARIAM ANSKSPYKKE
ALELLAQSQQ QIRAEYTILS SQYGDLASQI EKYNNLLDNI RKQKYMLATL SNPPSTN