Gene SNSL254_pSN254_0101 details

Gene Information

• Locus tag: SNSL254_pSN254_0101
• Symbol: traN
• ID: 4929453
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Newport str. SL254
• Kingdom: Bacteria
• Replicon accession: NC_009140
• Strand: +
• Start bp: 87842
• End bp: 90637
• Gene Length: 2796 bp
• Protein Length: 931 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 642572400
• Product: conjugal transfer mating pair stabilization protein TraN
• Protein accession: YP_001101975
• Protein GI: 134047133

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 45
• Fosmid unclonability p-value: 0.0283794
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGAAGTC ATAATTACTT TATGAAAGCT GTGGCCTCGC TGTTGACAGT AACCATGTCT 
GCGCTGCCGA TACATTCCTA CGCTAACGGT AGCCAAGACC AGGACATCAC AGCGGTGGGT 
AAAGAGGCCC AGGCTTTCGG ACAAAACCTC TCAAACTCAT TCAAGTCGAG CTCGGGGACT 
GTGCAAGATG GCACAATCTC TATGCCGACG TTGAAAGACG GTCAATTCCA AATGAACGGG 
GGGAGTCAGA TTAATGTCAA TGATCTATTC CCCGGAACGA GCGGGACCAA CAATAAACCT 
GATAGTTATT ACTTCCCTGA TGCCAATAAA CCTGATGTGG GCGGTCTGCA AGGCATTTAC 
GACTCTGGCG ATGACATGGA CAGCGTGGGG AATAATGCAA AAGGGTCGCT GTGGAGTGAT 
GCCAATAGTG CTAATCCATC AATCTCTGGT GCGGCATACA AGGTTCTTCT CGATGCCTCT 
AATCGATCAC GCCCTGATTT CAGTAATGAC CCGGTACTAA ATCTAAGCAA AAAGACCTAT 
GAGGATATGG ACCTCATCGC AGGTGGCTTT GGGGATTGTT CTGCCGAAAC AACCATCAAT 
CAGAATACTA TCAACGCCCA CATTCCAGAG TATGAACGGT GTCAGCGTGT TGTAGATCAA 
AGCGCGGACT GTGAGGTTGT CCATGACTAC GACGCCTCTG TGGTGAAGCA CTATGATGGT 
CCATATAACC TCAAATCTTG TGGAGAAGGC TGTACTGAGT TGTGGATTGG TCGAGTGGGG 
GACAACTACT GGAGTGGTAA CTGCAAGATT TATGAGGAGT ACACGCGGGT CCAAGTCAGC 
AATCCAGATG CCATAGTGTC TGCAACGCTT GAATACGCCA AGTGGGATGA CTACATGCAA 
GTGTGGGTCG GTAAGTCCGG CCAAGAGACT AAAGTGTGGT CTGGCCCAGA TGGCAACTTC 
CCTCCAGAAA CAGCCGGTAG ATGTGAGCTC TCCACGAGTT GGGAGCGAAA CCCTAATGTT 
GATGTCACTC CCTATTTTAA GAACGTGAAA GATGGTGATG TTGTTACGTT TAAGATCCGC 
GTTTCAGTAA GTGGCGAAGG TGAGGGTTTT GGCCGCATAA AACTCCGCTA TGACCCATCG 
AAAGCCATTA CCAAGGATGA GTGGGCTCCA CAGAGCTGCA TGGATTCAGC CAAAGGGGTG 
GTAGATGGTT TTGCGGAAGG CGAGATCACA TGTATAGATG ACCCGACTGA TGCTACTGGC 
TGCACAGTCA TCAATGGGAT CAAAGTTTGC GAATCTCAAC TCAAGCCGTC ACCTTTGCCT 
GGTATTCCAA AACTATGCAA AAAGGTTCGA GTTAAAGCTG ACTATGACTT CTATAAGGGG 
CAAATGGACT GCTGGACAGA CCCTCAAGGT GAAACGCACT GTCCGGTAAA CACGGGCGGG 
AATCTCGATA GCTGTCAGAA ATATGAAGAA AACCCTCAGT GCGGCTTCAT CAGTTCCAAA 
TGTGTTGATG GTGCTCAGGG AAGTTCTGGT ACGTGCTACG TCCACGAGGA TACTTATGAC 
TGTGGTACAG ATGTTTCTGT TCCGACCTTG GAAAAGGAAA CTGAGTACCA GTGCGGTGGG 
CCTATACGCT GCATGGGAGA TGACTGCCTT GATTTGACCA AAACACAAAG CACTGATTTT 
GCTCGCGCTA CTGCGTTGCT CAATGCAGCC CAATTCATGA CGCAGGATAT GAGCTGCACA 
GGCCAAGATG GGGATGACAA TCCTACCGGG GATGAAAACG TTATTTGCTC TGCTTTTGCA 
GGGGAAGCTG GCGAATGCAA GATAGCTGTT GGGGGAGTTT CTGATTGCTG TGAAAAGCCA 
ACCAATATAT CTCTTGCCGA TTATCTGAAC CTAATAATGG CCGTTCCAAA GCTCGATGGC 
GCAGTGATGG GGCTGACTGA TGGTAATGCG CTTAAAGGTG CTTATCAGGT ACTTAGGGAA 
CCTGCCCTTC AAGGGTGGAC AGAAGTCACA AAACCGTTCA CAAGTTATAT AGAGAACGTT 
TCAGGTGCTG TTGATTCGTT CTTCCAGCCT GTAGAGCAGT TTGTTGATCA ACTCATTGAC 
CAGCTCAAAG AGCAAGTCAA AGAAGTGATG ATGGATGTCA TGAAATCAGC AGGCCAAGAT 
GCAGCAACAG AGCAGGCGGC TGCCGCAGCA TCTGAACAAG CTGCCGAAGC AATGATGGAG 
ACTGCGACAA CATGGCTTAG CACTGCCATG ACGATATATA CCGTCTATGT CGTTGCGATG 
GTGATGATCC AGATGATTTA TAAGTGCGAG GAAGAAGAGT TCACTATGAA CGCAAAAAGA 
GCGCTCAAGA ATTGCACCTA TGTAGGCTCT TATTGTAAAT CTAAGGTGTT GGGCGCTTGT 
ATTGAAAAAA GAGAAGCGTA TTGCTGCTTC AATTCTCCGC TCTCTCGTAT TATACAAGAA 
CAGGTTCGCC CTCAATTGGG GCAGAACTTT GGAGACCCCA AAAATCCTCA GTGTGAAGGG 
ATTCCACTAG ATAAAATTGC CGAAATTGAT TGGAGCAAAA TTAATTTGGA TGAGTGGCTT 
GGGATATTAC AGCAGAACGG TAAATTCCCT GATCCGGCCT CAATAAATCT CGACTCGCTG 
ACTGGAGCAG GGAATGACTT CAATATTGAC GGGACGCGGA AGAATGCTCA GGAAAGGGCG 
TTGGAGCGGT TGGAAGGGAT TGATATTGAC GCGAAGCGAA AAGAGGCGAC AAACAGCATA 
GACCCTCAAA CAGGCGCGCC AACTGGTGGT GGATAA 

 

Protein sequence

MRSHNYFMKA VASLLTVTMS ALPIHSYANG SQDQDITAVG KEAQAFGQNL SNSFKSSSGT 
VQDGTISMPT LKDGQFQMNG GSQINVNDLF PGTSGTNNKP DSYYFPDANK PDVGGLQGIY 
DSGDDMDSVG NNAKGSLWSD ANSANPSISG AAYKVLLDAS NRSRPDFSND PVLNLSKKTY 
EDMDLIAGGF GDCSAETTIN QNTINAHIPE YERCQRVVDQ SADCEVVHDY DASVVKHYDG 
PYNLKSCGEG CTELWIGRVG DNYWSGNCKI YEEYTRVQVS NPDAIVSATL EYAKWDDYMQ 
VWVGKSGQET KVWSGPDGNF PPETAGRCEL STSWERNPNV DVTPYFKNVK DGDVVTFKIR 
VSVSGEGEGF GRIKLRYDPS KAITKDEWAP QSCMDSAKGV VDGFAEGEIT CIDDPTDATG 
CTVINGIKVC ESQLKPSPLP GIPKLCKKVR VKADYDFYKG QMDCWTDPQG ETHCPVNTGG 
NLDSCQKYEE NPQCGFISSK CVDGAQGSSG TCYVHEDTYD CGTDVSVPTL EKETEYQCGG 
PIRCMGDDCL DLTKTQSTDF ARATALLNAA QFMTQDMSCT GQDGDDNPTG DENVICSAFA 
GEAGECKIAV GGVSDCCEKP TNISLADYLN LIMAVPKLDG AVMGLTDGNA LKGAYQVLRE 
PALQGWTEVT KPFTSYIENV SGAVDSFFQP VEQFVDQLID QLKEQVKEVM MDVMKSAGQD 
AATEQAAAAA SEQAAEAMME TATTWLSTAM TIYTVYVVAM VMIQMIYKCE EEEFTMNAKR 
ALKNCTYVGS YCKSKVLGAC IEKREAYCCF NSPLSRIIQE QVRPQLGQNF GDPKNPQCEG 
IPLDKIAEID WSKINLDEWL GILQQNGKFP DPASINLDSL TGAGNDFNID GTRKNAQERA 
LERLEGIDID AKRKEATNSI DPQTGAPTGG G