| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_pSN254_0095 |
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| Symbol | traC |
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| ID | 4929417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009140 |
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| Strand | + |
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| Start bp | 81520 |
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| End bp | 83967 |
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| Gene Length | 2448 bp |
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| Protein Length | 815 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642572394 |
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| Product | type IV conjugative transfer system protein TraC |
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| Protein accession | YP_001101969 |
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| Protein GI | 134047203 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 0.124816 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGTAA CCATCAAAAA GAAACTCGAA GAAACGTTGA TCCCGGAGCA CTTGCGAGCT
GCCGGGATTA TTCCTGTCCT GGCCTATGAC GAAGACGATC ATGTCTTCCT TATGGATGAT
CACAGTGCAG GCTTTGGTTT CATGTGTGAG CCCCTGTGTG GTGCCGATGA AAAAGTTCAG
GAGCGAATGA ACGGTTTCCT GAATCAGGAG TTCCCGTCGA AGACTACGCT CCAGTTTGTC
CTGTTCCGCT CCCCGGACAT CAATCAGGAG ATGTACCGGA TGATGGGTTT GCGTGATGGC
TTCCGTCACG AGCTGCTGAC ATCTGTTATC AAGGAACGGA TTAACTTCCT CCAGCACCAC
ACGACAGATC GCATATTTGC CAAGACCAAC AAAGGTATCT ACGACAATGG CTTGATCCAA
GACCTCAAGC TGTTCGTTAC GTGCAAAGTC CCCATCAAGA ACAATAACCC GACTGAAAGC
GAACTCCAGC AGCTCGCACA GCTTCGCACG AAGGTCGAAT CATCGCTTCA AACCGTTGGT
CTGCGTCCTC GCACAATGAC GGCGGTGAAC TACATCCGGA TCATGAGCAC CATCCTGAAT
TGGGGGCCAG ATGCTTCATG GCGACATGAC TCTGTGGATT GGGAGATGGA TAAGCCCATC
TGCGAGCAAA TCTTCGATTA CGGCACCGAC GTGGAAGTCA GCAAGAATGG CATCAGGCTG
GGTGACTACC ACGCGAAAGT CATGTCAGCG AAAAAGCTGC CTGACGTTTT CTACTTTGGT
GATGCGTTGA CCTATGCCGG GGATCTCAGC GGCGGCAATT CCAGCATCAA AGAAAACTAC
ATGGTCGTGA CCAATGTTTT TTTCCCTGAG GCAGAAAGCA CGAAAAACAC TCTGGAGCGC
AAACGCCAGT TCACTGTAAA CCAAGCCTAC GGGCCGATGC TCAAATTCGT GCCGGTGCTG
GCGGACAAGA AGGAGAGCTT CGACACTCTC TATGAGTCCA TGAAAGAGGG GGCTAAGCCA
GTCAAGATCA CCTACTCGGT GGTTTTATTT GCTCCAACCA AAGAACGTGT TGAAGCGGCG
GCGATGGCCG CACGAAACAT CTGGCGTGAA TCTCGGTTCG AGCTGATGGA GGACAAGTTC
GTTGCTCTGC CGATGTTCCT CAACTGCCTG CCATTCTGTA CCGACCGGGA TGCAGTGCGA
GACCTATTCC GCTACAAGAC CATGACAACC GAGCAGGCTG CTGTGGTCCT GCCGGTGTTT
GGGGAATGGA AGGGGACCGG GACCTATCAT GCAGCGCTGA TTTCCCGCAA CGGCCAGCTC
ATGAGTCTGT CTCTTCACGA CAGTAATACC AACAAGAACC TGGTGATCGC AGCCGAATCC
GGCTCGGGTA AATCGTTCCT TACCAACGAA CTGATTTTTT CCTACTTGTC CGAGGGGGCT
CAGGTCTGGG TTATTGATGC CGGTAAGTCC TACCAGAAGT TGTCGGAAAT GCTCAATGGC
GACTTCGTTC ACTTTGAAGA AGGAACGCAC GTCTGCCTCA ACCCGTTTGA GCTCATACAG
AACTACGAGG ACGAAGAAGA CGCGATAGTC AGCCTCGTTT GTGCGATGGC TTCGGCTAAG
GGCTTGCTGG ATGAATGGCA AATCTCTGCG TTGAAACAGG TCCTTTCTCG CCTGTGGGAA
GAGAAAGGTA AAGAGATGAA GGTTGACGAC ATCGCTGAGC GCTGCCTGGA AGAAGAAAAT
GACCAGCGCC TCAAGGATAT TGGTCAGCAG CTCTACGCCT TTACGTCGCA GGGCAGCTAC
GGGAAATACT TCTCTCGCAA GAACAACGTC AGCTTCCAGA ACCAGTTCAC TGTACTGGAG
CTCGATGAAC TGCAAGGGCG TAAGCACTTG CGTCAGGTTG TACTACTCCA GCTTATTTAC
CAGATCCAGC AAGAAGTATT CCTGGGTGAA CGTAACCGCA AGAAAGTCGT CATCGTGGAT
GAGGCCTGGG ACCTGCTCAA AGAGGGCGAG GTCTCGGTCT TCATGGAACA TGCCTACCGC
AAATTCCGTA AGTACGGTGG CTCCGTTGTC ATTGCAACGC AGTCCATCAA CGACCTCTAT
GAGAACGCAG TGGGCCGCGC CATCGCGGAG AACTCGGCCA GCATGTACTT GCTCGGCCAA
ACCGAAGAAA CCGTGGAATC TGTTAAACGT AGCGGTCGTC TGACCCTTTC AGAGGGCGGG
TTCCACACCC TCAAAACGGT ACACACCATC CAAGGCGTGT ACTCAGAAAT CTTTATCAAA
TCGAAGAGCG GTATGGGCGT CGGTCGCTTG ATAGTGGGCG ACTTCCAGAA GCTACTTTAT
TCGACCGATC CGGTGGACGT TAACGCCATC GACCAGTTTG TGAAACAAGG CATGAGCATA
CCTGAGGCAA TCAAGGCCGT AATGCGAAGC CGTCGGCAGG CTGCATAA
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| Protein sequence | MIVTIKKKLE ETLIPEHLRA AGIIPVLAYD EDDHVFLMDD HSAGFGFMCE PLCGADEKVQ
ERMNGFLNQE FPSKTTLQFV LFRSPDINQE MYRMMGLRDG FRHELLTSVI KERINFLQHH
TTDRIFAKTN KGIYDNGLIQ DLKLFVTCKV PIKNNNPTES ELQQLAQLRT KVESSLQTVG
LRPRTMTAVN YIRIMSTILN WGPDASWRHD SVDWEMDKPI CEQIFDYGTD VEVSKNGIRL
GDYHAKVMSA KKLPDVFYFG DALTYAGDLS GGNSSIKENY MVVTNVFFPE AESTKNTLER
KRQFTVNQAY GPMLKFVPVL ADKKESFDTL YESMKEGAKP VKITYSVVLF APTKERVEAA
AMAARNIWRE SRFELMEDKF VALPMFLNCL PFCTDRDAVR DLFRYKTMTT EQAAVVLPVF
GEWKGTGTYH AALISRNGQL MSLSLHDSNT NKNLVIAAES GSGKSFLTNE LIFSYLSEGA
QVWVIDAGKS YQKLSEMLNG DFVHFEEGTH VCLNPFELIQ NYEDEEDAIV SLVCAMASAK
GLLDEWQISA LKQVLSRLWE EKGKEMKVDD IAERCLEEEN DQRLKDIGQQ LYAFTSQGSY
GKYFSRKNNV SFQNQFTVLE LDELQGRKHL RQVVLLQLIY QIQQEVFLGE RNRKKVVIVD
EAWDLLKEGE VSVFMEHAYR KFRKYGGSVV IATQSINDLY ENAVGRAIAE NSASMYLLGQ
TEETVESVKR SGRLTLSEGG FHTLKTVHTI QGVYSEIFIK SKSGMGVGRL IVGDFQKLLY
STDPVDVNAI DQFVKQGMSI PEAIKAVMRS RRQAA
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