Gene SNSL254_pSN254_0076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_pSN254_0076 
SymboltraB 
ID4929415 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_009140 
Strand+ 
Start bp56577 
End bp57893 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content52% 
IMG OID642572380 
Producttype IV conjugative transfer system protein TraB 
Protein accessionYP_001101955 
Protein GI134047150 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAAGC GATTTTGGAC ACAGTTAGAC CCCAACAAGA AGCGTTGGGT GTCTATCGCT 
GGCGGCGTCT TCGTTCTTTT TGCGGTCGTG ACAATGTTCT CTGGTGAACC CAAGAAAGAA 
GAGAAGCGCG GTCGCCAAGA AACCATCAAG CACGTTCTCA CAGACAAAAA CACCCGTGAG 
ATCGGGATAG ATTCGTTGTC TGCCGATGTG AAGATGGTGT CTCGTGAAAA CTCCGACCTG 
AAAAAGGAGC TGGAACGAGT CAAGAAAGAG CTGGAGGAAA CCAAAACCAC TGCCGGGAAA 
TCCAGTGATG TTGGCCGTGA GATGACCCGC CTTCGTCAAG ATTTGGACCG CCTGACCCAG 
AAGAACATGG AATTGGCTAA GAAAGTCGAA ACCGGCGCTG CTGGTGGAAA AACATCCTCT 
TCATCAGAGG ATGCCAGAGC CGATGTTAAT GGTGCATCTG GTGGTGATGG TCAGTTCATG 
GAGAAAAAGC TCGACTACAA AGATCCTGCA TCCTTTTTTC GGGACGCACC GCTTCCTGAC 
TCGAAGGGTG GGGCTCCTGC AACTGGCAAG GGAGACGGTC GTGATGCAAC TAAACCAGGC 
ATCCAAATAG TGAGCTACTC GCAGAAAGCG CCAGAAGTTG AAGAGAAGGA CAACAAGGAT 
GATGAGTCTA TCTACCTACC TTCTGGCTCC ATCCTGACAG GGGTGCTCAT CAACGGTATG 
GACGCACCAA CATCTCAAGG TGCTCGTCGA GATCCGTTCC CTTCGACCCT CAGGATTCAG 
AAAGAGGCTA TTTTGCCTAA CCGCTTCCGT GCGGATGTTC GTGAGTGCTT CCTGATTGTT 
TCAGGCTATG GAGATCTCAG TTCAGAGCGA GCGTACCTGC GTGGCGAGAC CTTCTCGTGC 
GTTCGGGATG ATGGGGGTGT CATAGAAGCG AAGCTGGATT CCTATGCAGT GGGTGAAGAC 
GGTAAGGCCG GTGTCCGTGG TCGCGTCGTA TCGAAGCAGG GGCAAATCAT CGCCAAGAGC 
TTGATGGCAG GCTTCCTTGG TGGCGTTTCC GAAGCCTTTG ACGTCAATCC TGTGCCGGTC 
GTTAGCACTA ACCCTGGCTC AAATACCCAG TACCAGTCTG TGTTCTCCGA CCAGATGTTG 
CAGGGAGCAG CAGTGAAGGG GGCCAGTAAG GCGCTAGATC GCATCGCTCA GTTCTATATC 
GACATGGCCG AAGGCATCTT CCCTGTTATC GAGGTCGATG CTGGCCGTCA GGTAGACATC 
ATCGTGACCA AAGGAACCAA GCTACAAATT CGTTCCACCG GGGGAACCAA GAAATGA
 
Protein sequence
MIKRFWTQLD PNKKRWVSIA GGVFVLFAVV TMFSGEPKKE EKRGRQETIK HVLTDKNTRE 
IGIDSLSADV KMVSRENSDL KKELERVKKE LEETKTTAGK SSDVGREMTR LRQDLDRLTQ 
KNMELAKKVE TGAAGGKTSS SSEDARADVN GASGGDGQFM EKKLDYKDPA SFFRDAPLPD 
SKGGAPATGK GDGRDATKPG IQIVSYSQKA PEVEEKDNKD DESIYLPSGS ILTGVLINGM 
DAPTSQGARR DPFPSTLRIQ KEAILPNRFR ADVRECFLIV SGYGDLSSER AYLRGETFSC 
VRDDGGVIEA KLDSYAVGED GKAGVRGRVV SKQGQIIAKS LMAGFLGGVS EAFDVNPVPV 
VSTNPGSNTQ YQSVFSDQML QGAAVKGASK ALDRIAQFYI DMAEGIFPVI EVDAGRQVDI 
IVTKGTKLQI RSTGGTKK