Gene SNSL254_pSN254_0065 details

Gene Information

• Locus tag: SNSL254_pSN254_0065
• Symbol: traI
• ID: 4929521
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Newport str. SL254
• Kingdom: Bacteria
• Replicon accession: NC_009140
• Strand: +
• Start bp: 46409
• End bp: 49381
• Gene Length: 2973 bp
• Protein Length: 990 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 642572369
• Product: type IV conjugative transfer system protein TraI
• Protein accession: YP_001101944
• Protein GI: 134047158

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 74
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCTGAAAG CCCTTAACAA GTTATTTGGT GGGCGAAGTG GAGTGATCGA GACCGCGCCG 
AGCGTCAGAG TGTTGCCGCT TAAAGACGTG GAAGATGAAG AAATCCCTCG ATACCCACCT 
TTTGCCAAGG GCCTGCCAGT GGCCCCACTA GACAAGATAC TGGCAACCCA AGCTGAACTG 
ATTGAGAAAG TGCGGAACTC TCTCGGTTTC ACTGTGGACG ACTTCAACCG GCTTGTTTTG 
CCGGTGATCC AGCGGTATGC CGCGTTTGTT CACCTGTTGC CAGCTTCCGA ATCACACCAC 
CACCGTGGCG CTGGTGGTCT GTTCCGACAT GGGCTTGAAG TGGCCTTCTG GGCAGCTCAG 
GCATCTGAGT CAGTTATCTT TTCCATCGAG GGGACGCCTC GTGAACGCCG TGACAATGAG 
CCGCGTTGGA GACTGGCGAG CTGTTTCTCC GGGCTGCTGC ATGATGTGGG TAAACCGCTC 
TCGGATGTGT CCATTACGGA CAAAGACGGG TCAATCACAT GGAACCCGTA TTCGGAGTCA 
CTTCATGACT GGGCACACCG TCACGAAATC GACCGTTACT TTATCCGGTG GCGCGACAAG 
CGACACAAAA GACATGAGCA ATTCTCGCTG CTGGCGGTGG ATCGAATTAT TCCGGCTGAG 
ACTCGGGAGT TTCTGTCCAA GTCTGGCCCG TCCATCATGG AAGCGATGCT GGAAGCTATC 
TCAGGAACCA GCGTCAATCA GCCTGTGACC AAGCTGATGC TTCGCGCTGA CCAAGAGAGC 
GTCTCACGGG ACCTTCGCCA GAGTCGTCTC GATGTGGACG AGTTCTCCTA TGGTGTGCCT 
GTCGAGCGGT ACGTGTTCGA TGCCATCCGC CGCCTGGTTA AAACCGGAAA ATGGAAGGTC 
AATGAGCCAG GCGCGAAAGT CTGGCACCTC AACCAAGGTG TATTCATTGC CTGGAAACAG 
CTTGGGGACC TTTATGACTT GATCAGCCAC GACAAGATCC CCGGTATTCC ACGAGACCCT 
GACACACTGG CCGACATTCT CATCGAACGT GGTTTTGCTG TACCAAACAC GGTGCAGGAG 
AAGGGTGAAC GTGCGTACTA CCGCTACTGG GAAGTTTTGC CTGAGATGCT CCAGGAGGCG 
GCGGGATCGG TGAAGATCTT GATGCTCCGA CTCGAATCAA ACGACCTGGT GTTTACGACT 
GAGCCTCCTG CGGCTGTTGC TGCGGAAGTT GTTGGTGATG TTGAGGACGC TGAGATTGAG 
TTCGTTGATC CTGAGGAAGT CGATGACGAC CAAGAGGAAG ATGTGTCAGC TCTGAACGAT 
GACATGTTGG CCGCAGAGCA GGAAGCAGAG AAAGCTCTAG CTGGTCTTGG CTTTGGTGAT 
GCGATGGAGA TGCTGAAAAG CACCTCAGAT GCTGTCGAGG AGAAACCAGA GCAAAAAGAT 
GCTGGATCAA CGGAATCATC TAAGCCTGAC GCTGGCAAGA AGGGTAAGCC GCAGAGCAAA 
CCGGGCAAAG CAAAACCGAA GAGTGATACA GAGAAACAAC CCCACAAACC AGAGGCAAAA 
GAGGATTTGT CCCCTCAGGA CATTGCCAAA AACGCACCAC CTTTGGCAAA CGACAATCCG 
TTACAAGCAC TCAAGGATGT TGGGGGTGGA CTGGGGGACA TCGACTTTCC GTTTGACGCA 
TTCAGCGCAT CGGCAGAGAC AGCCAGCACT GACGCAACAA ACTCAGAAAT CCCAGATGTG 
GCAATGCCCG GAAAGCAAGA GAAGCAGCCA AAACAGGACT TCGTTCCACA AGAACAAAAC 
TCCCTGCAGG GCGATGACTT TCCAATGTTC GGTAGTTCTG ATGAACCGCC ATCATGGGCG 
ATTGAGCCGC TCCCTATGCT GACTGACGCA CCAGAACAAA CAACACCAGC GCCAGCAATG 
CCACCTACGG ACAAACCTAA TCTGCATGAG AAAGACGCAA AGACCTTACT CGTTGAGATG 
TTAGCCGGGT ACGGAGAAGC ATCGGCGTTG CTTGAACAAG CGATCATGCC TGTTTTGGAA 
GGTAAAACGA CGCTGGGCGA AGTCCTATGC CTGATGAAGG GTCAAGCCGT CATTTTGTAC 
CCGGATGGCG CTCGGTCGCT GGGTGCGCCG TCAGAGGTTC TCTCGAAGCT GTCCCACGCC 
AACGCGATTG TTCCAGACCC GATTATGCCA GGTCGCAAAG TTCGTGATTT CAGCGGAGTG 
AAGGCAATTG TACTGGCGGA GCAGCTTTCA GATGCAGTCG TAGCGGCCAT TAAGGATGCC 
GAGGCGTCAA TGGGGGGATA CCAGGATGCC TTTGAGCTCG TCTCTCCCCC TGGCTTGGAT 
GCAAGCAAGA ATAAGTCTGC ACCGAAACAA CAAAGCCGAA AAAAGGCGCA GCAGCAGAAG 
CCTGAGGTTA ACGCCGGTAA ACCCTCGCCT GAACAAAAGG CGAAAGGTAA GGACTCCCAG 
CCACAGCAGA AGGAGAAGAA GGTCGATGTT ACTTCTCCGG TTGAAGAGCC GCAGCGCCAG 
CCGGTCCAAG AAAAACAGAA CGTGGCTCGC CTTCCTAAGC GGGAGGTTCA ACCAGTGGCT 
CCTGAGCCCA AAGTTGAGCG TGAGAAGGAA TTGGGACACG TCGAGGTGCG AGAAAGGGAA 
GAGCCAGAGG TTAGGGAGTT TGAGCCGCCT AAGGCGAAAA CAAACCCGAA AGACATCAAC 
GCGGAAGATT TCTTGCCGTC TGGTGTTACG CCTCAGAAAG CACTCCAGAT GCTCAAGGAC 
ATGATCCAAA AACGCTCGGG CAGATGGCTC GTGACACCTG TCCTGGAAGA GGATGGCTGC 
TTAGTAACCA GTGACAAAGC CTTCGACATG ATTGCCGGTG AAAACATCGG CATCAGCAAA 
CACATCCTCT GCGGGATGCT GAGCCGGGCA CAGAGACGGC CTTTGCTCAA GAAACGTCAG 
GGAAAACTGT ATTTAGAGGT AAATGAAACA TGA 

 

Protein sequence

MLKALNKLFG GRSGVIETAP SVRVLPLKDV EDEEIPRYPP FAKGLPVAPL DKILATQAEL 
IEKVRNSLGF TVDDFNRLVL PVIQRYAAFV HLLPASESHH HRGAGGLFRH GLEVAFWAAQ 
ASESVIFSIE GTPRERRDNE PRWRLASCFS GLLHDVGKPL SDVSITDKDG SITWNPYSES 
LHDWAHRHEI DRYFIRWRDK RHKRHEQFSL LAVDRIIPAE TREFLSKSGP SIMEAMLEAI 
SGTSVNQPVT KLMLRADQES VSRDLRQSRL DVDEFSYGVP VERYVFDAIR RLVKTGKWKV 
NEPGAKVWHL NQGVFIAWKQ LGDLYDLISH DKIPGIPRDP DTLADILIER GFAVPNTVQE 
KGERAYYRYW EVLPEMLQEA AGSVKILMLR LESNDLVFTT EPPAAVAAEV VGDVEDAEIE 
FVDPEEVDDD QEEDVSALND DMLAAEQEAE KALAGLGFGD AMEMLKSTSD AVEEKPEQKD 
AGSTESSKPD AGKKGKPQSK PGKAKPKSDT EKQPHKPEAK EDLSPQDIAK NAPPLANDNP 
LQALKDVGGG LGDIDFPFDA FSASAETAST DATNSEIPDV AMPGKQEKQP KQDFVPQEQN 
SLQGDDFPMF GSSDEPPSWA IEPLPMLTDA PEQTTPAPAM PPTDKPNLHE KDAKTLLVEM 
LAGYGEASAL LEQAIMPVLE GKTTLGEVLC LMKGQAVILY PDGARSLGAP SEVLSKLSHA 
NAIVPDPIMP GRKVRDFSGV KAIVLAEQLS DAVVAAIKDA EASMGGYQDA FELVSPPGLD 
ASKNKSAPKQ QSRKKAQQQK PEVNAGKPSP EQKAKGKDSQ PQQKEKKVDV TSPVEEPQRQ 
PVQEKQNVAR LPKREVQPVA PEPKVEREKE LGHVEVRERE EPEVREFEPP KAKTNPKDIN 
AEDFLPSGVT PQKALQMLKD MIQKRSGRWL VTPVLEEDGC LVTSDKAFDM IAGENIGISK 
HILCGMLSRA QRRPLLKKRQ GKLYLEVNET