Gene SNSL254_pSN254_0063 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_pSN254_0063 
SymboltopB 
ID4929505 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_009140 
Strand
Start bp43217 
End bp45409 
Gene Length2193 bp 
Protein Length730 aa 
Translation table11 
GC content54% 
IMG OID642572367 
ProductDNA topoisomerase III 
Protein accessionYP_001101942 
Protein GI134047127 
COG category[L] Replication, recombination and repair 
COG ID[COG0550] Topoisomerase IA 
TIGRFAM ID[TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCTTT ATATCTGCGA GAAGCCTTCT CAGGCAAAAG ATTTGGCTGG CGTAATGAAG 
GCCTCCCAAC GAGGTGATGG ATTTCTCCAT GATGGAGGAA ACCGCGTTAT TACGTGGGCG
TTCGGCCACC TGCTGGAATT GTATATGCCA GACGATTATG ACGAACGCTA CAAGTCATGG
TCACTGGAGA CCCTCCCTAT TGCACCAGAG TCATGGCGGT ACAACGTTCG CAAGAGTGCG
TTCAAACAGT ACAAAATTGT TGAGGGACTG GTCAAAAAGG CGAGCACCAT CTACATCTCA
ACGGACTACG ACCGAGAAGG TGAGGCTATC GCCCGTTCGC TTCTGGATCG ATTCCGCTAC
TCTGGCCCTA TTCGCCGAGT TTGTTTGACG GCTCTCGATG AGTCAAGCAT CAAGAAAGCG
CTGAACAACG TAAAGGATGG CAAGGATACG GTCTCACTCT ACTACGCCGC ATTGGCACGG
CAACGCGCTG ACTGGTTGGT AGGCATGAAC GTGAGCCGCC TCTACACAGT GCTGGCCCGA
GATGTCGGCT TCAACCACAC TCTTCACGTT GGCAGGGTTA TCACCCCAAC CGTCGCTCTT
GTTTGTCAAC GGGACCGAGA GATCGCCGGT TTCACCCCCT CACCATACTG GACTCTGGGT
GTGAACGTGT CCGTACAGAA TGGACAGTTT GCCGCCCAAT GGATACCACC AGAAGAGTGC
AGTGACGAGC AAGGCCGGTG CGTCAATAAG GCCTATGCCG AGCAGGTAGC CTCCCAGGTC
AATGGTGCCA ATGCTGTTAT CAGCAAAGCA GAAACCAAAC CAGGTAAAGA GTCAGCCCCC
CTCCCCTTCG ATCTAACGTC GCTGCAACAA TACGCGAGCA AACGATGGGG ATACACAGCT
CAGCAGGTAC TGGATGCAGC TCAAGCTCTG TACGAGACGC ACAAAGCGAC CACCTACCCT
CGTACTGACA GTCGTTATCT ACCCGAGAGC CAAAAGGAAG ACATTCCGGA CATTCTCCAG
GCGCTCATTT TGTCCGATCA GAACGTCTCT GGGCTGGTGG CTGGCGCAGA TCCTCATCGC
AAGGCCAGGG TATTCAATGA CGCCAAAGTG ACCGCGCACC ACGCGATCAT TCCAACACCG
GCCAGAACAG ACATCAGTGC CATGTCTGAG ATCGAGTTCA ATCTTTACGA CGCCATCCGT
CGTTTCTACA TCGCGCAGTT CTACAGCGAG TTCGAGTTCA CCAAAACCTC CATCGAGGTG
CAGTGTGGGC GTCACCTCTT TGCGTCCGCT GGTAAGACAC CTACCAAACA AGGCTGGAAG
GTTTTGTTTG CTTCTGATAG TGAAAGCAGT CCCAAGGACG AGGGGGAAGA CACCGACGCG
CCGGTTGAAC AAGAGAAGCT CCCCAGGGTT AGCCAGGGCG AACCTGCCTT GCTGAATGGG
GCCGAGCTGG CAAACAAAAT GACGCGGCCA GCACCGCACT TCACCGAAGC CACATTGCTT
GCCGCGATGG AGAACATTGC CCGGTTCGTG ACTGAGGAGA AGTTCAAACA AATCCTCAAA
GACACAGCCG GTTTAGGCAC TCCAGCAACA CGCGCAAGCA TCATCCAGGG CGCTGTTGAT
AAAGGCTACT TCAAGCGTCA GAAAAAGGTA CTGCTTGCAA CTGATAAGGC TCATGCGCTT
ATAGCAGTGC TTCCACCAGC CATCAAATCA CCCGGCATGA CTGCGGCTTG GGAGCAGGAG
CTTGAGAAAG TTGCCTCCGG CTCCGGGAAC ATGTCTGTCT TCATGAAGCA GATTTCCACC
TGGATCTGCC AAATGGTTGA GCAGCTCAAA GTGGCCGCAC CGGTTCTGAC CAAAGAAGGT
GGCGCGATGG CTAAAGCCTT CGAGGGCGCG AAGCCTCCTT CACACGAATG CTTCAACTGC
GGTGGAGAGA TGCACCGGAT CAAAGGGAAG AACGGTTTTT TCTGGGGCTG CCAGAACGAG
GCTTGCAAGA AGACGTTCCC AGACAACCGA GGGAAACCCG AGAAACGTAT CGCGGCGGAG
GATTGTCCAG ACTGCCCAGA TTGCGGTAGC CCGATGCGTC TCAGGAAAGG AAAAGCCCCT
GGCAAGAAAC GAGCCTCTAA GTTCTGGGGC TGCACAGCGT ATCCCGATTG CAAAGGCACT
ATGCCCTTCA AAAAGTCGGA CTTTATGGAT TGA
 
Protein sequence
MDLYICEKPS QAKDLAGVMK ASQRGDGFLH DGGNRVITWA FGHLLELYMP DDYDERYKSW 
SLETLPIAPE SWRYNVRKSA FKQYKIVEGL VKKASTIYIS TDYDREGEAI ARSLLDRFRY
SGPIRRVCLT ALDESSIKKA LNNVKDGKDT VSLYYAALAR QRADWLVGMN VSRLYTVLAR
DVGFNHTLHV GRVITPTVAL VCQRDREIAG FTPSPYWTLG VNVSVQNGQF AAQWIPPEEC
SDEQGRCVNK AYAEQVASQV NGANAVISKA ETKPGKESAP LPFDLTSLQQ YASKRWGYTA
QQVLDAAQAL YETHKATTYP RTDSRYLPES QKEDIPDILQ ALILSDQNVS GLVAGADPHR
KARVFNDAKV TAHHAIIPTP ARTDISAMSE IEFNLYDAIR RFYIAQFYSE FEFTKTSIEV
QCGRHLFASA GKTPTKQGWK VLFASDSESS PKDEGEDTDA PVEQEKLPRV SQGEPALLNG
AELANKMTRP APHFTEATLL AAMENIARFV TEEKFKQILK DTAGLGTPAT RASIIQGAVD
KGYFKRQKKV LLATDKAHAL IAVLPPAIKS PGMTAAWEQE LEKVASGSGN MSVFMKQIST
WICQMVEQLK VAAPVLTKEG GAMAKAFEGA KPPSHECFNC GGEMHRIKGK NGFFWGCQNE
ACKKTFPDNR GKPEKRIAAE DCPDCPDCGS PMRLRKGKAP GKKRASKFWG CTAYPDCKGT
MPFKKSDFMD