Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_pSN254_0063 |
Symbol | topB |
ID | 4929505 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_009140 |
Strand | - |
Start bp | 43217 |
End bp | 45409 |
Gene Length | 2193 bp |
Protein Length | 730 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642572367 |
Product | DNA topoisomerase III |
Protein accession | YP_001101942 |
Protein GI | 134047127 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 70 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACCTTT ATATCTGCGA GAAGCCTTCT CAGGCAAAAG ATTTGGCTGG CGTAATGAAG GCCTCCCAAC GAGGTGATGG ATTTCTCCAT GATGGAGGAA ACCGCGTTAT TACGTGGGCG TTCGGCCACC TGCTGGAATT GTATATGCCA GACGATTATG ACGAACGCTA CAAGTCATGG TCACTGGAGA CCCTCCCTAT TGCACCAGAG TCATGGCGGT ACAACGTTCG CAAGAGTGCG TTCAAACAGT ACAAAATTGT TGAGGGACTG GTCAAAAAGG CGAGCACCAT CTACATCTCA ACGGACTACG ACCGAGAAGG TGAGGCTATC GCCCGTTCGC TTCTGGATCG ATTCCGCTAC TCTGGCCCTA TTCGCCGAGT TTGTTTGACG GCTCTCGATG AGTCAAGCAT CAAGAAAGCG CTGAACAACG TAAAGGATGG CAAGGATACG GTCTCACTCT ACTACGCCGC ATTGGCACGG CAACGCGCTG ACTGGTTGGT AGGCATGAAC GTGAGCCGCC TCTACACAGT GCTGGCCCGA GATGTCGGCT TCAACCACAC TCTTCACGTT GGCAGGGTTA TCACCCCAAC CGTCGCTCTT GTTTGTCAAC GGGACCGAGA GATCGCCGGT TTCACCCCCT CACCATACTG GACTCTGGGT GTGAACGTGT CCGTACAGAA TGGACAGTTT GCCGCCCAAT GGATACCACC AGAAGAGTGC AGTGACGAGC AAGGCCGGTG CGTCAATAAG GCCTATGCCG AGCAGGTAGC CTCCCAGGTC AATGGTGCCA ATGCTGTTAT CAGCAAAGCA GAAACCAAAC CAGGTAAAGA GTCAGCCCCC CTCCCCTTCG ATCTAACGTC GCTGCAACAA TACGCGAGCA AACGATGGGG ATACACAGCT CAGCAGGTAC TGGATGCAGC TCAAGCTCTG TACGAGACGC ACAAAGCGAC CACCTACCCT CGTACTGACA GTCGTTATCT ACCCGAGAGC CAAAAGGAAG ACATTCCGGA CATTCTCCAG GCGCTCATTT TGTCCGATCA GAACGTCTCT GGGCTGGTGG CTGGCGCAGA TCCTCATCGC AAGGCCAGGG TATTCAATGA CGCCAAAGTG ACCGCGCACC ACGCGATCAT TCCAACACCG GCCAGAACAG ACATCAGTGC CATGTCTGAG ATCGAGTTCA ATCTTTACGA CGCCATCCGT CGTTTCTACA TCGCGCAGTT CTACAGCGAG TTCGAGTTCA CCAAAACCTC CATCGAGGTG CAGTGTGGGC GTCACCTCTT TGCGTCCGCT GGTAAGACAC CTACCAAACA AGGCTGGAAG GTTTTGTTTG CTTCTGATAG TGAAAGCAGT CCCAAGGACG AGGGGGAAGA CACCGACGCG CCGGTTGAAC AAGAGAAGCT CCCCAGGGTT AGCCAGGGCG AACCTGCCTT GCTGAATGGG GCCGAGCTGG CAAACAAAAT GACGCGGCCA GCACCGCACT TCACCGAAGC CACATTGCTT GCCGCGATGG AGAACATTGC CCGGTTCGTG ACTGAGGAGA AGTTCAAACA AATCCTCAAA GACACAGCCG GTTTAGGCAC TCCAGCAACA CGCGCAAGCA TCATCCAGGG CGCTGTTGAT AAAGGCTACT TCAAGCGTCA GAAAAAGGTA CTGCTTGCAA CTGATAAGGC TCATGCGCTT ATAGCAGTGC TTCCACCAGC CATCAAATCA CCCGGCATGA CTGCGGCTTG GGAGCAGGAG CTTGAGAAAG TTGCCTCCGG CTCCGGGAAC ATGTCTGTCT TCATGAAGCA GATTTCCACC TGGATCTGCC AAATGGTTGA GCAGCTCAAA GTGGCCGCAC CGGTTCTGAC CAAAGAAGGT GGCGCGATGG CTAAAGCCTT CGAGGGCGCG AAGCCTCCTT CACACGAATG CTTCAACTGC GGTGGAGAGA TGCACCGGAT CAAAGGGAAG AACGGTTTTT TCTGGGGCTG CCAGAACGAG GCTTGCAAGA AGACGTTCCC AGACAACCGA GGGAAACCCG AGAAACGTAT CGCGGCGGAG GATTGTCCAG ACTGCCCAGA TTGCGGTAGC CCGATGCGTC TCAGGAAAGG AAAAGCCCCT GGCAAGAAAC GAGCCTCTAA GTTCTGGGGC TGCACAGCGT ATCCCGATTG CAAAGGCACT ATGCCCTTCA AAAAGTCGGA CTTTATGGAT TGA
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Protein sequence | MDLYICEKPS QAKDLAGVMK ASQRGDGFLH DGGNRVITWA FGHLLELYMP DDYDERYKSW SLETLPIAPE SWRYNVRKSA FKQYKIVEGL VKKASTIYIS TDYDREGEAI ARSLLDRFRY SGPIRRVCLT ALDESSIKKA LNNVKDGKDT VSLYYAALAR QRADWLVGMN VSRLYTVLAR DVGFNHTLHV GRVITPTVAL VCQRDREIAG FTPSPYWTLG VNVSVQNGQF AAQWIPPEEC SDEQGRCVNK AYAEQVASQV NGANAVISKA ETKPGKESAP LPFDLTSLQQ YASKRWGYTA QQVLDAAQAL YETHKATTYP RTDSRYLPES QKEDIPDILQ ALILSDQNVS GLVAGADPHR KARVFNDAKV TAHHAIIPTP ARTDISAMSE IEFNLYDAIR RFYIAQFYSE FEFTKTSIEV QCGRHLFASA GKTPTKQGWK VLFASDSESS PKDEGEDTDA PVEQEKLPRV SQGEPALLNG AELANKMTRP APHFTEATLL AAMENIARFV TEEKFKQILK DTAGLGTPAT RASIIQGAVD KGYFKRQKKV LLATDKAHAL IAVLPPAIKS PGMTAAWEQE LEKVASGSGN MSVFMKQIST WICQMVEQLK VAAPVLTKEG GAMAKAFEGA KPPSHECFNC GGEMHRIKGK NGFFWGCQNE ACKKTFPDNR GKPEKRIAAE DCPDCPDCGS PMRLRKGKAP GKKRASKFWG CTAYPDCKGT MPFKKSDFMD
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