Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MmarC5_1720 |
Symbol | |
ID | 4928028 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanococcus maripaludis C5 |
Kingdom | Archaea |
Replicon accession | NC_009135 |
Strand | - |
Start bp | 1670681 |
End bp | 1671682 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 640167236 |
Product | H/ACA RNA-protein complex component Cbf5p |
Protein accession | YP_001098231 |
Protein GI | 134046746 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative [TIGR00431] tRNA pseudouridine 55 synthase [TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGAATTAA TTGTAAAAGA AGAATCAAAA ACGGATTATA ATTACGGATC TGATCCATAC AATAGAGATA TAAAAACACT CCTAAATACG GGGCTCGTTG TAATTGATAA GCCATCAGGC CCAACATCCC ATGAAGTTGC CGCATGGGTT AGAAACATGC TAAATTTAGT TAAAGCAGGA CATGGTGGAA CGCTTGACCC AAAAGTTACA GGGGCACTTC CAGTAGCATT AGGAAACACT ACAAAATGCG TTCCTATCTG GCATATCCCC CCAAAAGAAT ACGTGTGTTT GATGCATCTG CATGATGATG CTAAAGTTGA GGACATTGAG AATATTTTTA AAGAATTTAC AGGAAGAATT CACCAAAGAC CCCCTTTAAA AGCTGCTGTC AAAAGAAGCC TTAGAATTAG AAAAATCTAC GAAATTGAGA TTTTAGAAAT TGATGGGCGA GATATATTAT TTAGAACAAA ATGCCAGTCT GGAACGTATC TCAGAAAACT CGTAGATGAT ATGGGAGAAG CTCTTGGAAC ATCTGCACAC ATGCAGGAAC TTAGAAGAAC TATTAGTGGG CCATTTTATG AAAATGAAGC CGTTTATTTG CAGGATTTAC TCGATGCATA CATATTCTGG AAGGAAGACG GAAACGAAGA AGAATTAAGA AAATTGGTAA AACCTCTTGA ATACGGGCTA CAGCACCTTA AAAAAATAAT TGTAAAGGAT AGCGCGGTTG ATGCAGTATG CCATGGAGCT ACACTTTATT CCTCGGGCGT TTCAAAAATT GAAAAAGGAA TTGGAACTGA TGAAGTTGTT TTAATTGAAA CACTGAAAGG AGAAGCTGTT GCAGTTGGAA AACCGCTCAT GAATACAAAA GATATGTTAA AAACTGAAGA AGGCGAAGTT GTAGAAATAA CTCGTGTTAT AATGGAGCCA GGAATTTATC CAAGAATCTG GAAAAAAAGA AATAAAAATG ATAAAACTAA AGCGGAATCA AAGAAGAAAT AA
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Protein sequence | MELIVKEESK TDYNYGSDPY NRDIKTLLNT GLVVIDKPSG PTSHEVAAWV RNMLNLVKAG HGGTLDPKVT GALPVALGNT TKCVPIWHIP PKEYVCLMHL HDDAKVEDIE NIFKEFTGRI HQRPPLKAAV KRSLRIRKIY EIEILEIDGR DILFRTKCQS GTYLRKLVDD MGEALGTSAH MQELRRTISG PFYENEAVYL QDLLDAYIFW KEDGNEEELR KLVKPLEYGL QHLKKIIVKD SAVDAVCHGA TLYSSGVSKI EKGIGTDEVV LIETLKGEAV AVGKPLMNTK DMLKTEEGEV VEITRVIMEP GIYPRIWKKR NKNDKTKAES KKK
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