Gene MmarC5_1720 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmarC5_1720 
Symbol 
ID4928028 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanococcus maripaludis C5 
KingdomArchaea 
Replicon accessionNC_009135 
Strand
Start bp1670681 
End bp1671682 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content37% 
IMG OID640167236 
ProductH/ACA RNA-protein complex component Cbf5p 
Protein accessionYP_001098231 
Protein GI134046746 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0130] Pseudouridine synthase 
TIGRFAM ID[TIGR00425] rRNA pseudouridine synthase, putative
[TIGR00431] tRNA pseudouridine 55 synthase
[TIGR00451] uncharacterized domain 2 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGAATTAA TTGTAAAAGA AGAATCAAAA ACGGATTATA ATTACGGATC TGATCCATAC 
AATAGAGATA TAAAAACACT CCTAAATACG GGGCTCGTTG TAATTGATAA GCCATCAGGC
CCAACATCCC ATGAAGTTGC CGCATGGGTT AGAAACATGC TAAATTTAGT TAAAGCAGGA
CATGGTGGAA CGCTTGACCC AAAAGTTACA GGGGCACTTC CAGTAGCATT AGGAAACACT
ACAAAATGCG TTCCTATCTG GCATATCCCC CCAAAAGAAT ACGTGTGTTT GATGCATCTG
CATGATGATG CTAAAGTTGA GGACATTGAG AATATTTTTA AAGAATTTAC AGGAAGAATT
CACCAAAGAC CCCCTTTAAA AGCTGCTGTC AAAAGAAGCC TTAGAATTAG AAAAATCTAC
GAAATTGAGA TTTTAGAAAT TGATGGGCGA GATATATTAT TTAGAACAAA ATGCCAGTCT
GGAACGTATC TCAGAAAACT CGTAGATGAT ATGGGAGAAG CTCTTGGAAC ATCTGCACAC
ATGCAGGAAC TTAGAAGAAC TATTAGTGGG CCATTTTATG AAAATGAAGC CGTTTATTTG
CAGGATTTAC TCGATGCATA CATATTCTGG AAGGAAGACG GAAACGAAGA AGAATTAAGA
AAATTGGTAA AACCTCTTGA ATACGGGCTA CAGCACCTTA AAAAAATAAT TGTAAAGGAT
AGCGCGGTTG ATGCAGTATG CCATGGAGCT ACACTTTATT CCTCGGGCGT TTCAAAAATT
GAAAAAGGAA TTGGAACTGA TGAAGTTGTT TTAATTGAAA CACTGAAAGG AGAAGCTGTT
GCAGTTGGAA AACCGCTCAT GAATACAAAA GATATGTTAA AAACTGAAGA AGGCGAAGTT
GTAGAAATAA CTCGTGTTAT AATGGAGCCA GGAATTTATC CAAGAATCTG GAAAAAAAGA
AATAAAAATG ATAAAACTAA AGCGGAATCA AAGAAGAAAT AA
 
Protein sequence
MELIVKEESK TDYNYGSDPY NRDIKTLLNT GLVVIDKPSG PTSHEVAAWV RNMLNLVKAG 
HGGTLDPKVT GALPVALGNT TKCVPIWHIP PKEYVCLMHL HDDAKVEDIE NIFKEFTGRI
HQRPPLKAAV KRSLRIRKIY EIEILEIDGR DILFRTKCQS GTYLRKLVDD MGEALGTSAH
MQELRRTISG PFYENEAVYL QDLLDAYIFW KEDGNEEELR KLVKPLEYGL QHLKKIIVKD
SAVDAVCHGA TLYSSGVSKI EKGIGTDEVV LIETLKGEAV AVGKPLMNTK DMLKTEEGEV
VEITRVIMEP GIYPRIWKKR NKNDKTKAES KKK