Gene MmarC5_1670 details

Gene Information

• Locus tag: MmarC5_1670
• Symbol: truD
• ID: 4928439
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C5
• Kingdom: Archaea
• Replicon accession: NC_009135
• Strand: +
• Start bp: 1613343
• End bp: 1614512
• Gene Length: 1170 bp
• Protein Length: 389 aa
• Translation table: 11
• GC content: 29%
• IMG OID: 640167180
• Product: tRNA pseudouridine synthase D
• Protein accession: YP_001098181
• Protein GI: 134046696
• COG category: [S] Function unknown
• COG ID: [COG0585] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR00094] tRNA pseudouridine synthase, TruD family

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTTA GGCAAAAACA CGAAGATTTC ATCGTAAATG AGATTTTAGA TTATGAATTA 
AATGATTCTG GAAATTATTC GCTATATGCC CTCCAAAAAA ACGGAATAGA AAATTTAAAA 
GCGATATCGT ATCTTTCAAA AAACCTTGAA GTTCCTACAA AAGAAATTGG GTACTGTGGT 
TTGAAGGATA GGCACGCGAT TACAACGCAG TACGTTTCTA TTCCAAATGA ATATGGTAAA 
TTGTCCCTCA ATGAAGATAA TTTAAAGCTT GAATATATTG GAAACATTGA AAAACCCTTA 
AAAATCGGAA AATTGTATGG AAACAGATTT GAAATTATAG CAAGGGCCAT TGATAAAAAC 
GAATTTTTAA GGATTGCGGA TAATATAAGA GCATTAGGTT TTGGCGCACC CAATTACTAC 
GACGACCAGA GATTTGGGAG TGTATTTAAC GGTAAATTTA TAGCAAAAGA AATTTTGAAA 
GGCAATTACG AAGAAGTCGT TAAAATACTT TTAACGAGCT ACACAAAAAG TGAAAAAAAG 
CAGTTAAAGG ATTTAAAACG ATTTATTGCG AAAAATTGGG GCAGTTGGGA CGAATGCTTG 
GAATATATTG ATAAAAAACA GATAAGAAGT AAAATGTTTA GAAACATGGT TAAATCGTTA 
AAATACGAAA ATGATTTCAA AAAAGCGTTT AAATATGTTG ACAATCGATT GAAAGAGCTA 
TTTATCTCTG CGTATCAAAG CTATCTGTGG AATGAATGTT TAAAAGAGTT TTTAAAAGAA 
ATTATTCCAA AAGAAAATAG AAAATACGTT GATTATTCAT GCGGAACATT TTTGTTTTAT 
GAATCTATAG ATGAAGAATT ATTTTGTAAA TTAAAAGAAA TGGACTTTCC AACAATAGTT 
TCCGATGTAG AATACACAGA TTCAGAAAAA AAGATAATAA ATGCAATTTT AAAGAAAGAA 
CGGATTAAAT TTTCAGATTT TGAGAAATTG GACTTTGGAA AATTAAAATA CACGAAAAGA 
CCGATTATTT CAATTCCTGA AGATATCAAT ACTGGAACGT TTAAATCTGA CGAATTAAAC 
TCAAAAAAAT ATAAAATAGC TTTAGAATTT AGTTTAAAGA AAGGAAGCTA CGCAACTATA 
ATTTTAAAAA GGGTTTTTAA TATTTTATAA 

 

Protein sequence

MKFRQKHEDF IVNEILDYEL NDSGNYSLYA LQKNGIENLK AISYLSKNLE VPTKEIGYCG 
LKDRHAITTQ YVSIPNEYGK LSLNEDNLKL EYIGNIEKPL KIGKLYGNRF EIIARAIDKN 
EFLRIADNIR ALGFGAPNYY DDQRFGSVFN GKFIAKEILK GNYEEVVKIL LTSYTKSEKK 
QLKDLKRFIA KNWGSWDECL EYIDKKQIRS KMFRNMVKSL KYENDFKKAF KYVDNRLKEL 
FISAYQSYLW NECLKEFLKE IIPKENRKYV DYSCGTFLFY ESIDEELFCK LKEMDFPTIV 
SDVEYTDSEK KIINAILKKE RIKFSDFEKL DFGKLKYTKR PIISIPEDIN TGTFKSDELN 
SKKYKIALEF SLKKGSYATI ILKRVFNIL