| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_1635 |
|---|
| Symbol | |
|---|
| ID | 4928707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | - |
|---|
| Start bp | 1571885 |
|---|
| End bp | 1572838 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640167141 |
|---|
| Product | dimethylallyltranstransferase |
|---|
| Protein accession | YP_001098146 |
|---|
| Protein GI | 134046661 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.750047 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGTTTG ATAGGGAAAT ATTGTCAAAA ATCGATTCTG AACTCAAAAA ATATATGGAA
AAGGATACTA AACTTTATGG TGCGTCAAAA CACCTTTTAC TTGCAGGCGG TAAAAGAGTA
AGGCCTTACC TTTCAATTAT AACATATCTC TTGAAAAAAG ATGATATTAC TGAAATACTG
GCACCAGCAC TTTCTGTTGA ATTAATTCAT AATTATACGT TAGTCCACGA CGATATAATG
GATAACGATG ACCAAAGAAG AGGAATGCCA ACAGTTCACA CGATTTATGG TGAACCAATT
GCAATTTTAG CTGGAGATTT ATTATATGCA AAAGCTTTCG AAGCTCTTTC AAATATTGAA
GACAGTAAAA AGGCTCATGA AGTTTTAAAA GTGCTTTCAA AAGCCTGTGT TGAAGTTTGT
GAAGGACAAA CTGACGACAT GGAATTTGAA GAAAGATTTC CTACTTTAGA CGAGTACTTT
GACATGATTT CCAAAAAAAC AGGTGCTTTA ATTGTAGCTC CTGTAGAAAT CGGGGCAGTT
ATGGCAAACT GTACTCCTGA AGAAAGAAAA GCACTTTGTA ATTACGCAAA AAGAATTGGA
ATGACTTTCC AAATTCAGGA TGATGTTTTA GATTTAATTG GGGATCAAAA AACAATCGGA
AAACCTGTTG GAAGTGACAT TGTCGAAGGT AAAAAGACAA TGATGGTAAT TTACGCAATG
GAAAACCTTT CTGAAGATAA AAAAGAAAGA TTATTACAAA TTTTGGGAAA CAAAGATGCA
ACAGCTGATG AAGTTTCCGA AGCAATTGCA ATTTTAGCAG ATTCTATCGA ATACGCGAAA
AACACAATGA AAAAAGCGAC AGAAGAAGCT AAAGATTACT TAAAAATATT TGATGCGGAA
AAAAGAAAGA ATCTCGAAAG CATTGCTGAT TTTATCATTG AAAGAATTCA CTAA
|
|---|
| Protein sequence | MVFDREILSK IDSELKKYME KDTKLYGASK HLLLAGGKRV RPYLSIITYL LKKDDITEIL
APALSVELIH NYTLVHDDIM DNDDQRRGMP TVHTIYGEPI AILAGDLLYA KAFEALSNIE
DSKKAHEVLK VLSKACVEVC EGQTDDMEFE ERFPTLDEYF DMISKKTGAL IVAPVEIGAV
MANCTPEERK ALCNYAKRIG MTFQIQDDVL DLIGDQKTIG KPVGSDIVEG KKTMMVIYAM
ENLSEDKKER LLQILGNKDA TADEVSEAIA ILADSIEYAK NTMKKATEEA KDYLKIFDAE
KRKNLESIAD FIIERIH
|
|---|
| |