Gene MmarC5_1522 details

Gene Information

• Locus tag: MmarC5_1522
• Symbol: aksA
• ID: 4928768
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C5
• Kingdom: Archaea
• Replicon accession: NC_009135
• Strand: +
• Start bp: 1462288
• End bp: 1463448
• Gene Length: 1161 bp
• Protein Length: 386 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 640167018
• Product: trans-homoaconitate synthase
• Protein accession: YP_001098033
• Protein GI: 134046548
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0119] Isopropylmalate/homocitrate/citramalate synthases
• TIGRFAM ID: [TIGR02090] isopropylmalate/citramalate/homocitrate synthases

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATTGGA AAGCTGTATC TCCGTACAAC CCTAAATTAA ATTTGAAAGA CTGTTATTTG 
TATGATACGA CATTGAGAGA TGGTGAACAG ACTCCCGGAG TTTGTTTTAC ACATGATCAA 
AAACTTGAGA TCGCCAAAAA ACTGGATGAA CTTAAAATTA AACAGATCGA AGCGGGTTTT 
CCAATTGTTT CTGAAAACGA GAGAAAAGCC ATCAAATCAA TTACTGGCGA AGGATTAAAT 
GCACAAATTT TGGCGTTATC AAGAGTTTTA AAAGAGGATA TTGATAAAGC CATTGAATGT 
GATGTTGATG GAATAATTAC ATTCATTGCA GCTTCACCAA TGCATTTGAA ATACAAATTG 
CACAAAAGCC TCGATGAAGT CGAAGAAATG GGTATGAAAG CCGTTGAATA CGCAAAAGAT 
CACGGACTTT TCGTAGCATT CTCTGCAGAA GATGCGACAA GAACTCCTGT TGAAGACCTC 
ATCAGAATCC ACAAAAATGC AGAAGAACAC GGTGCCAATA GGGTGCATAT TGCAGATACC 
CTCGGGTGTG CAACACCACA GGCAATGTAT CATATCTGCT CTGAATTAAG CAGTAACTTG 
AAAAAAGCAC ATATCGGGGT ACACTGTCAC AACGACTTTG GGTTCGCAGT TATAAACTCG 
ATATACGGAT TAATTGGTGG AGCAAAAGCG GTATCTACAA CAGTTAACGG AATAGGCGAA 
AGAGCAGGAA ATGCTGCAAT TGAAGAAATT GTAATGGCAT TGAAAGTACT TTACGACCAC 
GATATGGGAT TAAATACTGA AATACTAACT GAAATATCGA AACTCGTTGA AAACTATTCA 
AAAATTAGGA TTCCCGAAAA TAAACCTCTT GTTGGGGAAA TGGCATTTTA CCATGAAAGC 
GGAATACATG TTGATGCGGT TTTAGAGAAT CCTTTAACGT ATGAACCGTT TTTACCTGAA 
AAAATAGGTC AAAAAAGAAA AATTATACTT GGAAAACATT CCGGATGCAG AGCAGTTGCA 
CACAGACTGC AAGAACTTGG GCTTGAAGCT TCAAGAGAAG AACTTTGGGA AATTGTGAAA 
AAAACTAAAG AAACCAGAGA AGAAGGTACT GAAATAAGCG ACGAAGTGTT TAAAAACATT 
GTCGATAAGA TTATAAAATA A 

 

Protein sequence

MDWKAVSPYN PKLNLKDCYL YDTTLRDGEQ TPGVCFTHDQ KLEIAKKLDE LKIKQIEAGF 
PIVSENERKA IKSITGEGLN AQILALSRVL KEDIDKAIEC DVDGIITFIA ASPMHLKYKL 
HKSLDEVEEM GMKAVEYAKD HGLFVAFSAE DATRTPVEDL IRIHKNAEEH GANRVHIADT 
LGCATPQAMY HICSELSSNL KKAHIGVHCH NDFGFAVINS IYGLIGGAKA VSTTVNGIGE 
RAGNAAIEEI VMALKVLYDH DMGLNTEILT EISKLVENYS KIRIPENKPL VGEMAFYHES 
GIHVDAVLEN PLTYEPFLPE KIGQKRKIIL GKHSGCRAVA HRLQELGLEA SREELWEIVK 
KTKETREEGT EISDEVFKNI VDKIIK