| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_1423 |
|---|
| Symbol | |
|---|
| ID | 4928504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | + |
|---|
| Start bp | 1364576 |
|---|
| End bp | 1365280 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640166919 |
|---|
| Product | putative RNA-associated protein |
|---|
| Protein accession | YP_001097935 |
|---|
| Protein GI | 134046450 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1500] Predicted exosome subunit |
|---|
| TIGRFAM ID | [TIGR00291] rRNA metabolism protein, SBDS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.088354 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGTCAT TGGACGATGC TGTTATAGCA AGGCTTCAAT CACATGGGGA AAAATTCGAA
ATACTCGTGG ATCCATACTT GGCAGCTAAA TTTAAAGAAG GACAGCCAAT AGGCATCTCA
GAAGTCTTGG GCGCTGAAGC GGTTTATAAA GATTCTGGAA AAGGGGAAAA AGTTCCAGAA
GATTTACTTT TGAAGATTTT TGAAACCTTG AATCCTTTGG AAATCGCAGA ACAGATTCTA
AAAAAAGGAA CTGTTCAGTT AACGGCTAAC CAGCGAAAAG AAATACAAGA ACAAAAGCGA
AAACAGATCG TGTCAATAAT TTCAAAAAAC ACGATAAACC CTCAAACTGA TACTCCTCAT
CCGCCAAAAA GGATTGAAAA CGCTATGGAA GAAGCTAGAC TCAGTGTTGA TATTTATAAA
AGCGCTGAAG AACAAATTCC TAAAATTATT AAGGAATTGA GGAAACTTTT ACCCATTAAG
TTTGAAAAAA GAGATGTTGC AGTTAAAATT CCCGGAGAAT TTGCTGGAAA CACATACCAT
ACACTTCATG ACTACGGCGC GACCAAGCAG GAAGAGTGGA TGGGCGATGG TTCGCTTGTT
CTTGTAATCG AAATTCCAAG CGGTATTGAA AGCGAATTTT ACATGCATTT GAACAAACTT
ACAAAAGGAA CTGTTCAAAC TAAAGTACTT AAAAGATATG ATTAA
|
|---|
| Protein sequence | MVSLDDAVIA RLQSHGEKFE ILVDPYLAAK FKEGQPIGIS EVLGAEAVYK DSGKGEKVPE
DLLLKIFETL NPLEIAEQIL KKGTVQLTAN QRKEIQEQKR KQIVSIISKN TINPQTDTPH
PPKRIENAME EARLSVDIYK SAEEQIPKII KELRKLLPIK FEKRDVAVKI PGEFAGNTYH
TLHDYGATKQ EEWMGDGSLV LVIEIPSGIE SEFYMHLNKL TKGTVQTKVL KRYD
|
|---|
| |