Gene MmarC5_1358 details

Gene Information

• Locus tag: MmarC5_1358
• ID: 4928422
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C5
• Kingdom: Archaea
• Replicon accession: NC_009135
• Strand: +
• Start bp: 1306050
• End bp: 1307888
• Gene Length: 1839 bp
• Protein Length: 612 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 640166854
• Product: thiamine pyrophosphate binding domain-containing protein
• Protein accession: YP_001097870
• Protein GI: 134046385
• COG category: [C] Energy production and conversion
• COG ID: [COG4231] Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
• TIGRFAM ID: [TIGR03336] indolepyruvate ferredoxin oxidoreductase, alpha subunit

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAATAATA AACATTTTTT AATGGGAAAT GAAGCGATTG CATACGGAGC AGTTGCTGCA 
GGATTACAGT TTGCTACGGG GTACCCGGGA ACTCCTTCAA CAGAAGTCAT GGAAACCCTG 
ATTAAAAACG CTAAAAAATA TAATTTCTAT GCTGAATGGT CTACAAACGA AAAAGTAGCA 
TTAGAAACGG CAATTGGTGC ATCATTTTCA GGTGCAAGTT CTATTGTAAC TATGAAACAG 
GTTGGATTGA ACGTTGCGTC TGACCCACTA ATGAGTTTAA CTTACCTTGG AGTAAACGGT 
CCATTGGTAC TCCTCGTAAC TGACGATCCA GGACCCCATT CATCACAGAC TGAACAAGAT 
ACCCGGTCTT TTGGATTATT TTCAAATATT CCCGTACTTG ACCCCTCAAA CTCACAGGAA 
GCCTACGAAA TGACTCGATA TGCTTTTGAA ATTTCAAAAA AGTATGAAAC ACCAGTATTT 
CTTCGAACTA CAACGAGAGT TTCACACAGG TGTGATGATG TTGTACTGGA TGAATTAAAA 
CCCTCGAACG AAGATATTGA AGGATTTTCA AAAAGTTCCA GATGGGCAAT ATTTCCAAAA 
TTGGTTGCAG AAAGACATCC AATTTTAGAA AAATTACAAA AAACACTATC AGATGAATTT 
TCAGATTCAA AATTTAATTT TAAGTCAGGA ACTGGAAAAA TTGGAATAAT TACTTCTGGA 
GCATCCCACC ACTACGTAAA CGAAGCTATT TCAAATAATA AAGACTTATT CTCAGTTTTA 
AAAATTGGAA CTCCGTATCC ATTCCCTGAA AATAAATTAC TAGAATTTAT AAACGATGTT 
GATTTGATAA TTACAGTTGA AGAACTCGAT TCATTCTTAG AAGATCAATT ACTCCAATTG 
CTTGGAAAAC ATGATATTTC AAAGACAGTT TATGGGAAGA AAAACAATAT TTTCCCTTGC 
TGTGGAGAAT ACAGCGTAGA TATTGTAAAA ACCGGAATTA ACAAAGTTTT AGATATTTTA 
AAAATTCAAA AAATTGAAAT TTCTGAAAAA TTAATCGAAA AAACTGATAT AATTCCGCTT 
CCAGTAAGGC CTCCAAATTT ATGTGCTGGA TGTATGCACA GAACCGTATT TTACGCATTT 
AAGGAAGTTT CAAAAGACTT GAAAAAACAA AATATTCAGA TTATATTTTC AGGAGATATC 
GGGTGCTACA CATTAGGAAA TGCTCCTCCT TTAGAATTAA TCGATACATG TCTTTGCATG 
GGGGCAGGTA TTAGCCTTGC AGGCGGAATC TCAAGAACTA CAAAAAATTC AAAAAATGTT 
GCATTTATTG GAGATTCCAC ATTTTTCCAT TCTGGAATTC CTGCTGTGAT TAATGCAGTG 
TATAATAAAG CCGACGTTAC AATTGCAGTA TTGGATAATA GAACCACTGC AATGACTGGA 
CATCAACCGC ATCCGGGAAC TGGAAAAACT GCGCTTGGAG AATCTACAAA ATTAATAGAT 
ATCGAAGGAA TTTTAAAAAG TTGCGGAATT GAATTTGTAA AAACTGTATC TACAGATGAT 
TTTTCCGCGT GTAAAGATAG TTCAAGAGAA GCTATTGAAT ATAATGGCCC TTCTGCGGTT 
GTTTTTAGAG GAAACTGTGT TTCACTTGTT AAATCCACTA AAAAATATGT TATTGATAAA 
AATAAATGTA CGAGCTGTAA AATCTGCGTT GAAAGACTTG GGTGCCCTGC GATAACGTTA 
AGTGAAAAAA TTCCCGAGAT TATGGAAACC TGTACAGGTT GTGGACTTTG TAAAGCCGTG 
TGCCCTGCTG ATGCAATAAA CGAGGTGGAT GAAAAATGA 

 

Protein sequence

MNNKHFLMGN EAIAYGAVAA GLQFATGYPG TPSTEVMETL IKNAKKYNFY AEWSTNEKVA 
LETAIGASFS GASSIVTMKQ VGLNVASDPL MSLTYLGVNG PLVLLVTDDP GPHSSQTEQD 
TRSFGLFSNI PVLDPSNSQE AYEMTRYAFE ISKKYETPVF LRTTTRVSHR CDDVVLDELK 
PSNEDIEGFS KSSRWAIFPK LVAERHPILE KLQKTLSDEF SDSKFNFKSG TGKIGIITSG 
ASHHYVNEAI SNNKDLFSVL KIGTPYPFPE NKLLEFINDV DLIITVEELD SFLEDQLLQL 
LGKHDISKTV YGKKNNIFPC CGEYSVDIVK TGINKVLDIL KIQKIEISEK LIEKTDIIPL 
PVRPPNLCAG CMHRTVFYAF KEVSKDLKKQ NIQIIFSGDI GCYTLGNAPP LELIDTCLCM 
GAGISLAGGI SRTTKNSKNV AFIGDSTFFH SGIPAVINAV YNKADVTIAV LDNRTTAMTG 
HQPHPGTGKT ALGESTKLID IEGILKSCGI EFVKTVSTDD FSACKDSSRE AIEYNGPSAV 
VFRGNCVSLV KSTKKYVIDK NKCTSCKICV ERLGCPAITL SEKIPEIMET CTGCGLCKAV 
CPADAINEVD EK