| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_1162 |
|---|
| Symbol | |
|---|
| ID | 4928584 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | + |
|---|
| Start bp | 1102892 |
|---|
| End bp | 1105186 |
|---|
| Gene Length | 2295 bp |
|---|
| Protein Length | 764 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640166652 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001097674 |
|---|
| Protein GI | 134046189 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCGGG CGTTTGAATT ACTAAACAAC ATGCAACACA ATAAGTCATT TAGCGACTAT
ATTGAACATG TTCGAGAAAT TCCAGAAAAA GATCCTGAAT ACTCCGAAGA AGAATTGAAT
CTTCCAGAAT GTATTCAAAA TTATCTGGAT AATAAAGGAA TTAAACCATA CACACACCAG
TATGAAACAC TAAAACATGC CCGAAATGGA AAAAACGTAC TTATTACAAC ATCAACTGCA
TCGGGAAAGA GTTTATGTTT TAATTTACCT GTATTCGAGA AGTTAGTAAA TAACAGTTCT
GCGACTGCAC TTTATATCTA CCCAACAAAA GCGCTGTCTA ATGATCAATT AACAACCCTA
AAATCCATGG AATCTGAAAT GGGTTTGGAA ATTCATCCTG ATAAGTATGA TGGAGATACT
AACAAAGCCA TACGCCCAGA AATTAAAAGA AAAAGTCGAC TAATCGCCAC AAACCCCTAC
ATGCTGCATA GAATTTTACC CCATCATGAT CATGGATGGG CCCGCTTTTT TAGAAATCTT
AAATATGTAA TAATTGATGA AGCTCACATG TATAGGGGAG TCTTTGGATC CCACGTATCT
TTTTTAATCA GACGTTTAAG ACGAATCTGC AAATTTTACA AGTCAAATCC ACAATTTATA
ATGTCCACTG CAACTCTTGC AAATCCTGAG GAGTTTTCTA AAAAACTAAC AGGACTTGAT
TTTGAAATTG TTGAAAACGA TGGATCTCAA AAGAGTAAGA AATATTTTAT ACTGTATAAT
TTAATGAAAC AGGAAAATTC GGAAGAATCC TGGAATAAAG CAGCTGTTAG ACTGTTTAAT
GCAAACATGC TATCGGAACT TCAAACCTTG GCATTTACAA GAACTAGAAG AATGGCAGAA
TTACTTTCAG TATATGTAAA AGCGGAACTC GATCCAATGC TTCAGAATAA GGTTTCGGCT
TATCGGTCAG GATACAGCAC AAAAAACAGA ATCGAAATAG AAAACAGATT AAAAAGAGGG
GAACTGTGGG GTACATTTTC TACAAATGCT CTTGAAGTTG GAATTGATAT TGGGTCCCTC
GACTCAGTAA TAATGTATGG ATATCCTGGA ACTTTAATGT CTCTTTGGCA GCAAGCGGGC
CGTGCAGGAC GTGCAGGAAG TGATTCAATA GTTACTCTCT TTGCAAATGC GGATGCACTT
GACCAGTACT TGGTAAAACA TCCTGAAATG ATCTTTGAAA AAACTCCGGA AAATGCAGTT
ATTGATTTAA ATAATCCATA TATCCTTGAA AAACAGCTTC TTTGTGCAGC TTATGAATTG
TATTTAACGC CTGATGGAAA TGATTTAGAA TTTTGTACAG ATATCAAAAA ACATATTTCA
AATTTGGAAG AAAAGGGACT TTTGGATAAA CAAAATGGTG GATATTTGTC AACTGTCAAA
AATCCTGCAT TAAATGTGAA CATTAACTTT ATTTCTTCAA ATAATTTCAA AGTTAAAGAT
GAAAATGGGA AACTAATCGA AGAAATTGAC ATGTGGCGAG TATTTTCTGA AGCGCATCCT
GGTGCGATTC TTATCAATCA GAGTGTAAAA TATCTTATCG AATCAATGGA TTACAAAAAT
AGGATTTGTA AAGCTAGAAA AGTAAAATAT GATTACCATA CAGATGCCTA TGCCCTAACC
GATATAAAAA TTGAAAAAGA AATTGATTCT AGAAATTATG GGGAATTTAC ATTCCATTTT
GGAGAAGTTT TGGTAATTAC TGAATATTTT GAATTTGCGG AAAAGAAGTA CGGGAACATT
TTAAATAGAA AACCATTGGT ATTACCACCA TTAAAATTCA AAACTACTGC AATGTGGATT
ACATTTCCAC CAAGGTTCAT GAAAGCAGTA ACTGAGGGGG ATAAAAGCGA TATTGGTGGA
CTTCACGGTG CAGAACATGC GATGATAAAT ATATTCCCAC TTCATGTGAT GTGTGATAGA
AGTGATATTG GCGGAGTTTC CGTTCTAAAA CACCAAGATA CCAAACGTTC AACGATTTTC
ATATACGATG GGATGGAAGG TGGGATTGGA TTATCTGAAA AAGCATTTAC TCTTCCAAAA
AAGATCGTTA AAACTGCATA CGAACTTGTT CGGGACTGTA ACTGTGAAAC GGGATGCCCT
GCATGCATAT ATTCTCCAAA ATGCGGGAAT TCAAATCAGG AACTTGACAA GGTTTCAACT
TTGAGGATAC TTGAAGGATT GAATAAAAAA CTTGAATTTG AGCTTGATTG GTGGCTTGAT
GAAAAAGAAA AGTGA
|
|---|
| Protein sequence | MGRAFELLNN MQHNKSFSDY IEHVREIPEK DPEYSEEELN LPECIQNYLD NKGIKPYTHQ
YETLKHARNG KNVLITTSTA SGKSLCFNLP VFEKLVNNSS ATALYIYPTK ALSNDQLTTL
KSMESEMGLE IHPDKYDGDT NKAIRPEIKR KSRLIATNPY MLHRILPHHD HGWARFFRNL
KYVIIDEAHM YRGVFGSHVS FLIRRLRRIC KFYKSNPQFI MSTATLANPE EFSKKLTGLD
FEIVENDGSQ KSKKYFILYN LMKQENSEES WNKAAVRLFN ANMLSELQTL AFTRTRRMAE
LLSVYVKAEL DPMLQNKVSA YRSGYSTKNR IEIENRLKRG ELWGTFSTNA LEVGIDIGSL
DSVIMYGYPG TLMSLWQQAG RAGRAGSDSI VTLFANADAL DQYLVKHPEM IFEKTPENAV
IDLNNPYILE KQLLCAAYEL YLTPDGNDLE FCTDIKKHIS NLEEKGLLDK QNGGYLSTVK
NPALNVNINF ISSNNFKVKD ENGKLIEEID MWRVFSEAHP GAILINQSVK YLIESMDYKN
RICKARKVKY DYHTDAYALT DIKIEKEIDS RNYGEFTFHF GEVLVITEYF EFAEKKYGNI
LNRKPLVLPP LKFKTTAMWI TFPPRFMKAV TEGDKSDIGG LHGAEHAMIN IFPLHVMCDR
SDIGGVSVLK HQDTKRSTIF IYDGMEGGIG LSEKAFTLPK KIVKTAYELV RDCNCETGCP
ACIYSPKCGN SNQELDKVST LRILEGLNKK LEFELDWWLD EKEK
|
|---|
| |