| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_0896 |
|---|
| Symbol | upp |
|---|
| ID | 4927527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | + |
|---|
| Start bp | 877807 |
|---|
| End bp | 878502 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640166395 |
|---|
| Product | uracil phosphoribosyltransferase |
|---|
| Protein accession | YP_001097418 |
|---|
| Protein GI | 134045932 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0035] Uracil phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAG ATGAAAGATG GGAAGGAGTT TACTCTTTTG AAGACTCGCC CTATTTAATG
GAAACATTGA CTGATTTAAG AAAGATCAGT ACTGAAAACA TATCTTTTAG AAAAGGACTC
GTAAGACTTG GAAGATACAT GGGTTATGAG TTAACGAAAA CCATGGAATT TGAAAAAATG
CCCATTCAAA CGCCTTTAGA AAAAACAGAA GGTGTTTTTG CAAAAGATAG AAAAAATGTA
GTGATTATAA CAATTTTAAG AGCTGCATTT CCACTGATGG AAGGATTGAT TAAAAATTTC
GAGTCTGCAA AAGTAGGAAT CGTGTCTGCT TCAAGAGGGC ATGCGCCAGA CTTTAAAATA
GAAATGAATT ACATTAAAGT TCCTCAACTT AACCCTGAAG ATACGGTTAT TGTATCTGAC
CCGATGATTG CAACAGGTTC TACATTAATA CACGTTTTAA AAGAGTTTAG AGACTCAAAA
CCAAAACGAA TGATGATAGT TGGAGTTCTT GCAGCACCTG AAGGAATAAA TGCAGTGAAA
AAAGAATTTT CAGACGTTGA AATATTTGTA ACAAAGATCG ACGAAAATCT AAATAAAGAC
GGATATATAG TTCCGGGCCT TGGAGATGCA GGGGATCGTG CATTTGGCGA ACCATTTAAA
GTACCTATGC TACCGCAGAT GCATAACTTG GAATAA
|
|---|
| Protein sequence | MIKDERWEGV YSFEDSPYLM ETLTDLRKIS TENISFRKGL VRLGRYMGYE LTKTMEFEKM
PIQTPLEKTE GVFAKDRKNV VIITILRAAF PLMEGLIKNF ESAKVGIVSA SRGHAPDFKI
EMNYIKVPQL NPEDTVIVSD PMIATGSTLI HVLKEFRDSK PKRMMIVGVL AAPEGINAVK
KEFSDVEIFV TKIDENLNKD GYIVPGLGDA GDRAFGEPFK VPMLPQMHNL E
|
|---|
| |