| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_0863 |
|---|
| Symbol | |
|---|
| ID | 4928938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | - |
|---|
| Start bp | 838834 |
|---|
| End bp | 840570 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640166362 |
|---|
| Product | thiamine pyrophosphate binding domain-containing protein |
|---|
| Protein accession | YP_001097386 |
|---|
| Protein GI | 134045900 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4231] Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits |
|---|
| TIGRFAM ID | [TIGR03336] indolepyruvate ferredoxin oxidoreductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.274333 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT TAATGCTTGG AAACGAGGCA GTGGCGAGAG GCGCTTACGA AGCAGGGGTT
CTTGTGGCAA CAGCGTATCC CGGAACCCCT AGTACTGAGA TTACCGAATA TATTTCAAAA
TATTCTGAAA TTAATTCGGA ATGGTCTGTA AATGAAAAAG TTGCTCTTGA AGTAGGTATC
GGTTCAGCAA TTGCAGGCGC TAGAACCATA GTTTCAATGA AACACGTGGG ATTAAACGTT
GCAGCAGATC CATTGATGAC TGTCGCATAT ACAGGAATTA ATGCAGGACT TTTGATAGTT
GTTGCAGATG ATCCTAGTAT GCACAGTTCC CAAAACGAGC AAGATACAAG ATATTATGGA
ATGTTTGCAA AAATACCGGT ATTAGAACCT TCGGACAGTC AAGAATGTAA AGATTTTGTT
AAATTGGGTT TTGAAATCAG TGAAAAATTT GATACTCCAG TAATATTGAG ACTCAGCACG
AGAGTATCTC ACTCACAAAG TCTGGTTGAA TTGGAAGAAA AAGAATCAAT TGAACTAAAA
CCATATGATC AAAATCCTTC GAAATATATT TCAGCACCTG CATATGCGAA AAAAAGAAGA
GTTTTCATCG AAGAAAGATT AGAAGAACTA TCCACTTTTG CAGATTCATC AGATTTAACC
AAAATTGAAT ATGGGAATAA AAAAATCGGA ATTATTACGA GCGGAATTGC ATACAATTAC
GCAAAGGAAG TTATTCCCGA TGCATCTTTT TTGAAATTTG GAATGAGCTA CCCTCTTCCA
GAAGAAAAAA TTAAAGAATT CGTTGAAAAT TGCGATAAAG TTTATGTTTT TGAAGAATTG
GAACCCATTT TTGAGCAAAA AATTAAATCA ATGGGATTAA ACGTAATTGG AAAAGAAATA
TTCCCAATTA TCGGAGAATT AAGCAGCGAA ATAATTAGAA ATGCGCTTTT AAACGAATCA
AAAGAAGTTA TTGATAAATT TGATGAGTTA CCTCAAAGGC CACCAGTCCT GTGTCCTGGA
TGCCACCATA GGGGTCCATT TTATGTTCTT AAAAAATTAA AACTCCATGT TGCTGGAGAC
ATTGGCTGTT ACACCCTTGG GGGATTTGGG CCATTAAATG CAATCGATAC CACAATCTGT
ATGGGCGCAA GTATTGGAAT GGCACACGGA TTTGAAAAAG CAAGAGGAAA AGATTTCGCT
AAAAAATCTG TTGCGGTTAT CGGAGACTCT ACATTCTGTC ATTCTGGAGT TACTGGTTTA
ATGGATATTG TATACAACAA AGGACACAGT ACCGTGATAA TTTTAGATAA TTCAATCACT
GCAATGACGG GACACCAAGA AAACCCTTCA ACTGGAAAAA CACTCTCTGG AGAAAGTGTT
CCTGCAATTG ATTTTGAAAC ACTTGGAAGA GCAATTGGAA TAAACAGAAT TCGAGTGGTT
GACGCGTACG ATTTAAAATC ACTCGAAGAA ACGATAAAAG AAGAAGTAAA TGCAGAAGAA
CCTTCGTTAA TCATTACAAA AAGACCTTGT GTATTGATAA AAGGCGCCAA ATTTGATTTT
AAAGATTATA GAATAGATCC TGAACTTTGT ACTGGCTGCA AATTATGTTT AAAAATAGGA
TGTCCAGCAA TTTCATTTGA CGGAAAAGTT GCAAAGATAA ACGATTCATT ATGCGTTGGA
TGCGGGCTTT GTAAAGACTT ATGTAAATTT TCAGCAATAG TTGAGGTGGT AAAATAA
|
|---|
| Protein sequence | MKKLMLGNEA VARGAYEAGV LVATAYPGTP STEITEYISK YSEINSEWSV NEKVALEVGI
GSAIAGARTI VSMKHVGLNV AADPLMTVAY TGINAGLLIV VADDPSMHSS QNEQDTRYYG
MFAKIPVLEP SDSQECKDFV KLGFEISEKF DTPVILRLST RVSHSQSLVE LEEKESIELK
PYDQNPSKYI SAPAYAKKRR VFIEERLEEL STFADSSDLT KIEYGNKKIG IITSGIAYNY
AKEVIPDASF LKFGMSYPLP EEKIKEFVEN CDKVYVFEEL EPIFEQKIKS MGLNVIGKEI
FPIIGELSSE IIRNALLNES KEVIDKFDEL PQRPPVLCPG CHHRGPFYVL KKLKLHVAGD
IGCYTLGGFG PLNAIDTTIC MGASIGMAHG FEKARGKDFA KKSVAVIGDS TFCHSGVTGL
MDIVYNKGHS TVIILDNSIT AMTGHQENPS TGKTLSGESV PAIDFETLGR AIGINRIRVV
DAYDLKSLEE TIKEEVNAEE PSLIITKRPC VLIKGAKFDF KDYRIDPELC TGCKLCLKIG
CPAISFDGKV AKINDSLCVG CGLCKDLCKF SAIVEVVK
|
|---|
| |