| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_0781 |
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| Symbol | |
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| ID | 4928338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C5 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009135 |
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| Strand | + |
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| Start bp | 750128 |
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| End bp | 752566 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640166282 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001097306 |
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| Protein GI | 134045820 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01057] DNA topoisomerase I, archaeal |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.935548 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGGAC TAATTATCTG TGAGAAACCA AACGTTGCTA AAAAAATTGC AGAAGCCCTT
GGGAAACCAA AGAAAAAATC CCACAATTCA GTACCGTACT ACGAGTTGGA AAGACAGGGA
GAAACCATAG TTGTAGCTTC AGCAGTAGGT CACCTCTATA CGCTACAAGA AAAAACCAAA
ACTAAATTTG GAGATTACCC TGTTTACGAT ATTCAATGGG TTCCAGCATC TACGCTCGAT
GAAAAAAAAT ACATTCAAAA ATACATCGAT GCACTGAAAA AAGTCTCAAA AGGCGCAAAC
AAATTTTACG TTGCGACGGA CTGGGATATC GAAGGGGAAT TAATTGGGTA CCATGCATTA
AACTTCACAT GCGGTCAAAA AAACGCTCAC AGATTAAGAT TTTCAAGTTT AACAAAGAAA
GAAATTGCAA AAGCTTATGA AAATCCAAAT GAAATTGATT TTGGGCTTGT TGATGCAGGA
GACAGCCGAC ACAAAATCGA CTGGTATTTT GGTATAAATG TTTCAAGAGC ACTTATGCAG
GCAGTTAGTT CTGTTAAACG ATGGAAAACC CTCAGTACAG GTAGGGTTCA AGGTCCAGCA
CTTGCTTTTT TAGTAGATAA AGAATTAGAA ATTAGAAATT TCGTTCCAAC ACCGTACTGG
GTGCTTGAAG CTCTCTTGGA TAATGAATTA ATTGCAATTC ACGAGCTTGA AAAATTCTGG
GATGAAGAAG AAGCAAATAA CGCTTTTGAA AAAGTAAAAG ATCAAAAGCA GGCGACAGTT
TCAGATGTTA AAAAAACAAT GAAAAGCATT CCCCCAAATC CGCCTTTCGA TTTAGGTGCA
CTCCAAAGAG AAGCACACAA TATGTTTAGA TTTTCACCTA AAAGAACGCA GGAAATTGCG
CAAAAATTGT ATGAAAAAGG ATACTGTTCA TACCCGAGAA CCAGCTCCCA AAAACTTCCT
GATGATAAAG CGTACATGGA CGAAATCCTG AAAAATCTTT CAAAAAATAA AGATTACAAA
CCATATATTG AAAAAATTTT AAGTGAAAAC AGAAAACCAA TTTCAGGTAA AAAAGACGAC
CCTGCACACC CTGCAGTACA CGCAGTGGAC GTTCCAAAGG AAAAACTTCC TGATGATGAA
TTAAAATTGT ACGAACTTAT TGCAAGACGA ACAATTGCAC TTTACTGGGA TAACGCTAAA
AGGGAATATT CAAAAATCAA CCTCGATATA AACGGCGAAA TATTCAAATT AAGTGGTTCA
AGAACCGTTG AAGAAGGATG GCACGAAATA TACTACTACA CTAAATTTGA TGAAGTGGAA
CTTCCAGAAT TGAAGAAAAA AGACGTTATA AATGTAAATA ATATTAACTT CGAAGCAAAA
GAGACGAAGC CTCCAAAAAG ATACACAATG GCTTCAATTA TCAAGGAACT TGAAAAAAGA
AAACTTGGGA CAAAGGCAAC GAGAGCAGAC ATTCTTGAAA AACTAACCAA ACGTGGTTAT
GTGATTGAAG ATGGTTCTTT AACTGTTACT GATCTTGGAA TTGGAGTTAC AGAAACTTTG
AGAAAGTACT GTCCTGAAAT TGTTGAAGAA ACACTTACAA GAGATCTTGA AGATAAATTA
GAGCTTATTC AGGATAAAAA AATCAAAAAG GAAGACGTTA TAAAAGAAAC AGAAACCAAG
CTTACAAAAA TCCTTGGAGA ATTCCGTTTA AAAGAAAAAG AAATCGGAAA CGAACTTGTG
GATAAACTCG ATTCGACAAA CCGGTCTTTA CAAATCATTG GAAAATGTAA ATGTGGCGGA
GACATGATTA TCATCCGCAC AAAGGGTAAA AAAAGATTTG TTGGATGTAG TAATTACCCA
GACTGTGACG TTACATTCCC ACTACCTCAA AAAGGAAGAA TTAAAGTTCT AAACGAAGTC
TGCGAAAAAT GCCAGAATCC AGTAATTGGG CTTGATAGAT TAAAAATTTG TGTAAATCCA
GACTGTACCA CGAGAATTTC AGAAGAAGAT AAAAAAGAAA TTGAAAGAGC TGAAAAAGAA
GAAAAAATAT GTCCAAAATG TGGTGGCAAG CTTTTAATTA AAAAGGGACC TTATGGAGTT
TTCAGAGGCT GCGAAAATTA CCCAAAATGT AAATATACGG AAAAATTAAA TGGAGAATCC
AATGAAAAAG AAATCGTTGG AAAATGTCCA AAATGTGGAA GCGACCTCTA TAAAAGAAGA
GGGCGATTTG GAGAATTTAT TGGATGCAGC AATTACCCAA AATGTAGACA CACTGAAAAA
ATAGAAAAGA AAAAAGACGA TAATGCAAAA GAAACTAAGG CGGAAAAGAA GGAAGAAACA
AAACCAAAAA CCACGAAGAA AACAGCCCCA AAAAAGACTA CAACTAAAAA AACAGCTGCC
AAGAAAGCAC CTGCTAAAAA AACAGCGACT AAAAAATAA
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| Protein sequence | MTGLIICEKP NVAKKIAEAL GKPKKKSHNS VPYYELERQG ETIVVASAVG HLYTLQEKTK
TKFGDYPVYD IQWVPASTLD EKKYIQKYID ALKKVSKGAN KFYVATDWDI EGELIGYHAL
NFTCGQKNAH RLRFSSLTKK EIAKAYENPN EIDFGLVDAG DSRHKIDWYF GINVSRALMQ
AVSSVKRWKT LSTGRVQGPA LAFLVDKELE IRNFVPTPYW VLEALLDNEL IAIHELEKFW
DEEEANNAFE KVKDQKQATV SDVKKTMKSI PPNPPFDLGA LQREAHNMFR FSPKRTQEIA
QKLYEKGYCS YPRTSSQKLP DDKAYMDEIL KNLSKNKDYK PYIEKILSEN RKPISGKKDD
PAHPAVHAVD VPKEKLPDDE LKLYELIARR TIALYWDNAK REYSKINLDI NGEIFKLSGS
RTVEEGWHEI YYYTKFDEVE LPELKKKDVI NVNNINFEAK ETKPPKRYTM ASIIKELEKR
KLGTKATRAD ILEKLTKRGY VIEDGSLTVT DLGIGVTETL RKYCPEIVEE TLTRDLEDKL
ELIQDKKIKK EDVIKETETK LTKILGEFRL KEKEIGNELV DKLDSTNRSL QIIGKCKCGG
DMIIIRTKGK KRFVGCSNYP DCDVTFPLPQ KGRIKVLNEV CEKCQNPVIG LDRLKICVNP
DCTTRISEED KKEIERAEKE EKICPKCGGK LLIKKGPYGV FRGCENYPKC KYTEKLNGES
NEKEIVGKCP KCGSDLYKRR GRFGEFIGCS NYPKCRHTEK IEKKKDDNAK ETKAEKKEET
KPKTTKKTAP KKTTTKKTAA KKAPAKKTAT KK
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