Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MmarC5_0724 |
Symbol | dapF |
ID | 4928508 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanococcus maripaludis C5 |
Kingdom | Archaea |
Replicon accession | NC_009135 |
Strand | + |
Start bp | 693519 |
End bp | 694352 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 640166225 |
Product | diaminopimelate epimerase |
Protein accession | YP_001097249 |
Protein GI | 134045763 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase [TIGR00654] phenazine biosynthesis protein PhzF family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0456566 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTTA CAAAAATGCA TGGTTTAGGC AACGATTATA TCTACGTAGA TGCAATTTCA CAAAAAATTG AAAATCCTAA CGAAATTTCA AAATTCGTAA GCGACAGACA CTTTGGAATT GGTTCAGATG GACTTGTATT AATTCTTCCA TCGGATGTCG CAGACTTTAA AATGAGAATG TTTAATTCAG ATGGTTCAGA AGCTGAAATG TGTGGTAATG CCATTAGGTG TGTTGGAAAG TTCGTTTATG ATAAAAAAAT GACTGATAAA TCCACAATTA GTATTGAAAC ACTTGCAGGA ATAAAAGTTC TTGAAATGAC TGTTGAAAAC GGAAAAGTAG TTTTGGTAAA AGTTGATATG GGTGAACCCA TTCTAAAAGC AGAAACAATT CCTGTTTTAA GTGAAAAACA TCCTGTAATC GATGAAGAAA TTACTGCAAA AGATTACTGC TACAATTTTA CCTGTGTTTC AATGGGAAAC CCTCATGCAA TAACATATAT TGAAAATGTG GAAGAATTCC CTCTTGAAAA AATCGGTCCG TTATTTGAGG TTCACGAAAA ATTCCCAAAA AAAACAAACG TCGAATTTGT AGAATTAATC GATGATTCTA CTGTTAAAAT GAGAGTTTGG GAAAGAGGTG CTGGTGAAAC ACTTGCGTGC GGAACTGGAG CTTGCGCAGT TTTAACTGCA TCTGTTTTAA AAGGATACGT TGGTAGAAAA GCAACAGTCA AACTTCTCGG TGGAGATTTA ATAATTGAAT GGAATGAAAA AGATAATCAC ATCTACATGA CCGGTCCTGC AACAACAGTC TTTGAAGGAG AAATTGACAT TTAA
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Protein sequence | MKFTKMHGLG NDYIYVDAIS QKIENPNEIS KFVSDRHFGI GSDGLVLILP SDVADFKMRM FNSDGSEAEM CGNAIRCVGK FVYDKKMTDK STISIETLAG IKVLEMTVEN GKVVLVKVDM GEPILKAETI PVLSEKHPVI DEEITAKDYC YNFTCVSMGN PHAITYIENV EEFPLEKIGP LFEVHEKFPK KTNVEFVELI DDSTVKMRVW ERGAGETLAC GTGACAVLTA SVLKGYVGRK ATVKLLGGDL IIEWNEKDNH IYMTGPATTV FEGEIDI
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