| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_0681 |
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| Symbol | |
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| ID | 4929320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C5 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009135 |
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| Strand | + |
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| Start bp | 656086 |
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| End bp | 657735 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 640166183 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001097207 |
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| Protein GI | 134045721 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.607702 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGATT ATAACAATGC AGTAGTTTTC TATGATGCTA GCGGAATTGA ATATTCAAAA
CAGATTAAAA AAACTCTTGA AAAGGGTTTT GAAAGAGAGT GTTTTTTAAT AAACTTAGAT
GCTCGTGAAA ATACCATTTC AAAGATTAAT TCGGCGCTGA GAACGAGTAA ATATGTTATT
TTTTTGTTTA GTTCGATGTA TTCTAACGAA GAAATGTTAA ATGAAGCAAA AAATGCATTT
AATTCTGATA AACAGGTGAT TTCTTTAAAA TTAAACGATC CCAGTTTAAA ACAACAGATT
TCAGTCCACC AGTCTGAATT TACAGATAAC TACAGTCTTT CAAAAAAAGT AAGCGAAGAA
GTTGAAAAAC TCAAAAAAAT GGAAATCAAA GGTCCAGATT TTGTAGAATC CGTTGTTTCG
TTTAGCATGG GAAATATTTA CTTTAATTTT GAAAAATACG ACGAAGCCAT AAGATGCTAC
AAAAAAGCCG TAAAGATAAT ACCTGATTTT GTAGATGCAC TAAATAATTT TAATTCACTC
TCAAGCACGA AATTATCTGA AATTGAAGAT AAACGACCTG CCATATACAA GGATGCAAAA
ATTGATGAAA TTGTACCTGA TATTTTTGAA AATGCTGCTG AAGAAGAACC AAAAGAAACT
CAAAAGTTTA CAGAACTTGA ACCAGATGAA CTTGAAGACC GTATTTTAGA TGGGGATATT
GGAACAGTAG ATGAACCGGA AATCGAAGAA GTAGTTGTTG ATGAAATAGA CGTTGAAATG
CCTGTTGAAG AAATTTTAGA AACTGATTTA GAAAATAAAA TTGACGATGA AATCGAAGAA
TTAAATGACA AACAAGATGT AATTTTTGAA GAAGAACCAA AAGAAGACAT CGAAATTGAA
GTTAATGATG TAAATGAAGA AATTCTTGAT GATTTCGAGG AAGAAGAAAT TGAAGCCGAT
ATTGAAGAAG TCGTTAAAGA AATTTCTGAA GAAACAATTG AAGACATTGA AGTTTTAGAA
GTTATTGCTG AACCTGAATC AGATATCAAA GAACTAATTG ATGCAGATAC TATTGAATTA
GAATCGCTTG AAGAAATATT AGATAAAACT GAAATTGAAG CTGAAACGGA AGAAATAATT
AGGGAAGAAA TAACAGATAC AGGTTTTGCT GAAGTTTTAA CTTTTGCAAA CGCACTTTAC
GAATCTGGAG ATTTTAACGC TGCTGAAGTA GAATATAAAA AAGCAATAAG TTTAAATCCT
GACTATTCGG AAGCACACAA TAATTACGGA TGCCTTTTAG AATATCTCGA AAGATTTGAT
GACGCAGAAA TTGAATTTAA AAAAGCAGTT GAATTGGATG TTTTAAATTC AAAGGCACAT
AATAACCTTG CAACACTTTT AGCAAAATCT GAAAAATATG AAGAAGCAGA AATGCATTAT
AAAAAAGCAA TTGAGCTTGA TACAACTTAC TGGGGAGCAA TTTATAATTT AGGGGCAATG
TACGCAACTT TAAAAAGATA TGACGATGCG ATAGCCCAAG TCAAGTCAAT GATTAAAATA
TTCCGGTCTG AAGGAAATAT TAAGGAAGTT TTGGAGCTGA AAAAACTCGT AAAACATTTA
AAAAAATTAA AAATCCAAAA TGGTAAATAA
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| Protein sequence | MADYNNAVVF YDASGIEYSK QIKKTLEKGF ERECFLINLD ARENTISKIN SALRTSKYVI
FLFSSMYSNE EMLNEAKNAF NSDKQVISLK LNDPSLKQQI SVHQSEFTDN YSLSKKVSEE
VEKLKKMEIK GPDFVESVVS FSMGNIYFNF EKYDEAIRCY KKAVKIIPDF VDALNNFNSL
SSTKLSEIED KRPAIYKDAK IDEIVPDIFE NAAEEEPKET QKFTELEPDE LEDRILDGDI
GTVDEPEIEE VVVDEIDVEM PVEEILETDL ENKIDDEIEE LNDKQDVIFE EEPKEDIEIE
VNDVNEEILD DFEEEEIEAD IEEVVKEISE ETIEDIEVLE VIAEPESDIK ELIDADTIEL
ESLEEILDKT EIEAETEEII REEITDTGFA EVLTFANALY ESGDFNAAEV EYKKAISLNP
DYSEAHNNYG CLLEYLERFD DAEIEFKKAV ELDVLNSKAH NNLATLLAKS EKYEEAEMHY
KKAIELDTTY WGAIYNLGAM YATLKRYDDA IAQVKSMIKI FRSEGNIKEV LELKKLVKHL
KKLKIQNGK
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