| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_0680 |
|---|
| Symbol | hemC |
|---|
| ID | 4928416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | + |
|---|
| Start bp | 655082 |
|---|
| End bp | 655996 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640166182 |
|---|
| Product | porphobilinogen deaminase |
|---|
| Protein accession | YP_001097206 |
|---|
| Protein GI | 134045720 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0181] Porphobilinogen deaminase |
|---|
| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.301712 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAGTTAA GAATCGGAAC AAGAGGCAGT ACGCTTGCAA TGATCCAGAC AGAATATATC
GCAGGTCTTT TAAATGATCT CGGTGTCGAA ACAGAAATAA TTATTGTCAA AACTACTGGT
GACAAAGATC AGAACAAAAA ACTCGCAGAT CTTGGACTTG GTGTTTTTAC AAAAGAACTC
GACAATAAAA TGCTCGAAAA CGAAATTGAT ATTGCAGTAC ACAGTTTAAA GGATGTTCCA
ACTCTTTGGA GTGAGGAATT GCAGATTACT GCAACGCCAA AACGGGAGAG TCCTGATGAT
ATAATAATAT GGAGAAAAGA CAGCGATTTT GATATCGAAC ACGATGAATT AAATATCGGA
ACTTCAAGCA TTAGAAGAAC GTCTTTTTTA CAATTTACGC ATCCAAATCT AACGCCTAAA
CTTTTAAGGG GAAATGTTGC AACAAGAATT AATAAATTAA GAACTGGGGA ATACGATACA
ATCATAATGG CAAAAGCAGG GCTTATAAGG CAGGGTATCG ATTTATCAGA ATTTAATTAC
AAAAAACCTG AAATATTGCC TGCTCCTGCG CAAGGTGTTA TTGGAGTTGC TTCAAGAAAG
GCTGATACGA AAATAAATGA AATTTTGGAC AAAATATGTG ATAAGAAAAC ATATATTGAA
GCTGCTGCTG AAAGATGGGC TTTAAAAGAA TATGGTGGTG GATGTCAGGC ACCTTTTGGA
GCTTTTGCAA TTTATGATAC TGAAGACGGG ATTTTAAATT TAAGATGTGA ACTTGTGGAT
GAACAGGGCA CTATAAAGCG AGTAAAATCA AACGAAGGAT TTATAATCTG CACTACTGAT
GATGTTGAAC TTGCAAAGGA ACTCGGTGCA AGAGTCGGTG CATTATTTAA AGAAATCGAA
ACTTTTACTT ATTAG
|
|---|
| Protein sequence | MKLRIGTRGS TLAMIQTEYI AGLLNDLGVE TEIIIVKTTG DKDQNKKLAD LGLGVFTKEL
DNKMLENEID IAVHSLKDVP TLWSEELQIT ATPKRESPDD IIIWRKDSDF DIEHDELNIG
TSSIRRTSFL QFTHPNLTPK LLRGNVATRI NKLRTGEYDT IIMAKAGLIR QGIDLSEFNY
KKPEILPAPA QGVIGVASRK ADTKINEILD KICDKKTYIE AAAERWALKE YGGGCQAPFG
AFAIYDTEDG ILNLRCELVD EQGTIKRVKS NEGFIICTTD DVELAKELGA RVGALFKEIE
TFTY
|
|---|
| |