| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_0561 |
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| Symbol | |
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| ID | 4928392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C5 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009135 |
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| Strand | + |
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| Start bp | 515856 |
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| End bp | 517784 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 640166065 |
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| Product | replication factor A |
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| Protein accession | YP_001097090 |
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| Protein GI | 134045604 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1599] Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.270799 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATTG ACAAGTTAAA ACAAAAAATA CTATCTAAAA TCAATCAGGA AGAACTGGAA
AAAAAAGTAA AAGAAAAAAT TGAAGAAAAT TCGGGGCTTC TTGGGGAAGA AAGTGCAGTA
ATGCTTGTTG CACAGGAACT TGGAATAGAA ATAACTTATG AGGATGATGA AGAGGAATAC
GATTTTACAA TTAAAGATAT TGCTGACGGG CAGAAAAATG TCGAAGTCAC TGGAAAAATT
ATTGAAATTT CACCTGAAAA GGAATTTAAT CGAAAAGATG GCTCAACTGG AAAAATTGCA
TCAATTACTA TTGGCGACAA TACGGGAATT ACAAGACTTA CGCTCTGGAA CGACAAAACA
GATCTTATCG AAGGCCTAAA AAAAGGAGAT GTTGTAAAAA TTGAAAATGC ATTCAGCAGA
AAATGGAATG ACAAAGTTGA GTTAAACAGC GGTTCAGAAC TTTCAATTGA CAAACTTAAA
AAGTACGATG AATCAAGATA TCCCATTTTA AAAGAAAGTT ATAAGATTTC AGAATTAATG
CCTAATTTTT CTGGGACAAT TAATGCAGAA GTTGTTGCAG CATACCCTAA AAAGGAATTT
AATCGAAAAG ATGGAACGAA AGGCCAGCTA AAATCATTGA TATTAAAAGA TGACAGTGGG
GGCATAAGGG GAACTCTCTG GAACGAACTT GCAGATTTTG AAGTTAAAAA AGGAGATATT
GCAGAAGTAA GCGGATATGT AAAACAGGGA TATTCGGGAC TTGAAATTTC CGTTGATAAT
ATTGGAATAG TTGAAGAATC TGTCAAGGAA GAAAAACCTG TCGAAAAAAT GAATATTTCG
GAACTTACAA GTTTTGATGG AGAATATGTA ACAATCTCTG GAAATATTAC TAACATTTCT
GGATCCAGAG AAGTTCAGTT TAGTGACAGG AATGCAGAAG TTCAGGATAT GTATCTAAAC
GATGGAACTG GAATGGTAAA AATTGCATTT TGGGGCCCAA ATAGAAATAT TCTCAATGAT
TTAAAAGAAG GAGATTATTT AAACGTTTCA AATTGTAAAT TAAGAACATA TACTGACAAT
ACTGGCGAAA AAAGAGCTGA TTTAACTTAC AACTATATGT CAGAACTTAA AAAAGACGAA
AGCGCAAGCG AAAAAATAGT TGAAAAAATA ACTGCTATTG GAGATATCTT AAGCGGAAGC
GCAGATAGCT CCGATGTAAC TGTTATTGGA ATGGTTACAA ATGCGTATCC TGTAAACGAG
TTTTCGAGAA GTAATGGTGG AACCGGAAAA GTTAGAAATA TTATGTTGGA TGACAGTACT
GGAAGCATAA GGATGGCTCT GTGGGATGGC GATGCAGAAA CCGAAATTTC AGAAGGTGAT
GTTGTAAAAT TAATACATGG ATACGCTAAA GAAAGTGGCG AATACATGGA TTTGTCAACC
GGAAGGTTTG GTAGAATCGA AGTAAATCCT GAAGGAATTT CAATAAAATC TCCAAGAAAT
TATATTGCTG ACCTTGAAGA AGGTATTTCA ACTGAAATTA GCGGAACTGT TGTGGATTAC
CGAAAACAAG ATGTAATTCT TAGTTTATGT CCAAACTGTA GAAAAAGAGT TAGTTTAGTT
GATAATAAAT ATACCTGTGA AGTTTGTGGT GAAGTTACAC CAAACGAACT TTTAGTTTCA
AATTTAACGC TTGACGATGG AACTGGAGTT ATTAACTGTA GAATATATGG AAACAACGTT
GAAAAAATAA CTGAACTTTC AAAAGACAAA TTAAAAGAAA TGAATTTAGA TGCTCTTTCA
AATGTACTCG GAAAAGACGT TTTATTCTAT GGAACACCTT CATTTAGAAA TGATGACTTA
GAATTTGCAG TAAAAAGAGT TAATTTTGCA GATGCATCAA AAGAATTGGA AGTTTTAAAA
CAACTCTAA
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| Protein sequence | MNIDKLKQKI LSKINQEELE KKVKEKIEEN SGLLGEESAV MLVAQELGIE ITYEDDEEEY
DFTIKDIADG QKNVEVTGKI IEISPEKEFN RKDGSTGKIA SITIGDNTGI TRLTLWNDKT
DLIEGLKKGD VVKIENAFSR KWNDKVELNS GSELSIDKLK KYDESRYPIL KESYKISELM
PNFSGTINAE VVAAYPKKEF NRKDGTKGQL KSLILKDDSG GIRGTLWNEL ADFEVKKGDI
AEVSGYVKQG YSGLEISVDN IGIVEESVKE EKPVEKMNIS ELTSFDGEYV TISGNITNIS
GSREVQFSDR NAEVQDMYLN DGTGMVKIAF WGPNRNILND LKEGDYLNVS NCKLRTYTDN
TGEKRADLTY NYMSELKKDE SASEKIVEKI TAIGDILSGS ADSSDVTVIG MVTNAYPVNE
FSRSNGGTGK VRNIMLDDST GSIRMALWDG DAETEISEGD VVKLIHGYAK ESGEYMDLST
GRFGRIEVNP EGISIKSPRN YIADLEEGIS TEISGTVVDY RKQDVILSLC PNCRKRVSLV
DNKYTCEVCG EVTPNELLVS NLTLDDGTGV INCRIYGNNV EKITELSKDK LKEMNLDALS
NVLGKDVLFY GTPSFRNDDL EFAVKRVNFA DASKELEVLK QL
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