| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_0215 |
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| Symbol | |
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| ID | 4928539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C5 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009135 |
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| Strand | - |
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| Start bp | 182815 |
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| End bp | 185484 |
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| Gene Length | 2670 bp |
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| Protein Length | 889 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640165714 |
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| Product | DNA-directed RNA polymerase subunit A' |
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| Protein accession | YP_001096746 |
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| Protein GI | 134045260 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02390] DNA-directed RNA polymerase subunit A' |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAGAT TTGATGTTCC AAAGGAAATC GGAGATATTA CATTTGGATT GCTCTCCCCT
GAACAGATAA GAACCATGTC AGTTGCGAAA ATCGTTACCG CAGACACCTA CGATGATGAC
GGATACCCAA TTGACGGTGG ATTGATGGAT ACTAGACTCG GTGTTATTGA CCCTGGATTA
GTATGTAAAA GCTGCAGTGG AAGAGTAGGA ACTTGTCCTG GACATTTCGG ACATATTGAA
CTTTCAAAAC CAGTAATCCA TATAGGATTT GCAAAAGATA TTTATAAAAT CTTAAAAGCA
GTGTGCCCAC ACTGTGGAAA AGTTGCGATT ACAGAGCTAA AAAGGGATGA ATACTTAGAA
AAAATGGCCA AACTCGAAGA AGATGGCGGA GACCCTTGGA CACTCTGTGA TGATTTATTA
AAAGAAGCTG CAAAAGGTAG CGTCTGCCCT TCATGTGGTG AAGTTAAAGC AGATGTAAAA
TACGATAAAC CTACTGCATA CCACCAATTA GATGGAAAAG CTCAAAAACA GTTAACATCA
TCAGAAGTTA GAGAAATTTT AGAAAAAATT CCTGCTGAAG ACTGTAGATT ATTAGGAATT
AATGCAAAAG TTGCAAGACC TGAATTTATG GTTTTGACAG TTTTACCAGT TCCTCCAGTA
ACGGTTAGGC CTTCAATCAC ACTTGAAAGT GGAGAAAGAA GTGAAGATGA CTTAACACAT
AAATTAGTTG ATATTATCAG AATTAACCAG AGGTTAGAAG AAAATATCAA CGGTGGAGCT
CCAAACTTGA TTATTGAAGA TTTATGGGAC TTATTACAGT ACCACATAAA CACTTACTTT
GATAATGAAG CACCAGGAAT TCCCCCAGCA AGACACAGAA GTGGAAGACC TCTTAGAACA
CTTGCTCAAA GGTTAAAGGG TAAAGAAGGT AGGTTCAGAC ACAACTTAGC AGGTAAACGG
GTAAACTTCT CTGCAAGGAC TGTTATCTCA CCTGACCCAA GACTCAGTAT CAACGAAGTT
GGTATTCCGA AATTAATCGC AAAAGAATTA ACTGTTCCTG AAAAAGTTAC ACCTTACAAC
ATTGAAAAAG TAAGAACACT TCTAAGAAAC GGAGCTGACA CCCACCCCGG GGTAAACTAC
GTGGTTAAGA AAGTAAGAAC TAAAGATGGA AAAGAAGAAG AATACAAAAT AAAAATTACT
GATGCCAACA AAGACATGTG GGTAGAAAAT ATAACCGATG GAATGGTTGT TGAAAGGCAC
CTTTCAAACG GAGACATTGT GTTGTACAAT AGGCAGCCAT CACTTCACAG AATGTCAATC
ATGGCACACA AAGTAAAAGT TCTTCCATAC AGAACTTTCA GACACAACTT GTGTGTATGT
CCACCTTACA ACGCGGATTT CGATGGTGAC GAGATGAACG TTCACGTCCC ACAGTCTGAA
GAAGCGAGAG CTGAAGCTGA AAACTTAATG CTCGTTGAAA AACACATTGT TTCCCCAAGA
TTTGGTGGTC CAATCATCGG TGGAATTCAC GACTTTATTT CAGGAGCATA CATCCTTACA
AGTTCGTTAT TTACAAAAGA CGAAGCTTTA ACATTATTAA ATAGCTCTGG ACTCAATTTA
GATCTTGGCG AACCCGATCT CGTTGAAAAT AAAGTGGAAT ACTACAGCGG AAAAACATTA
TTCAGTAAAA CACTTCCAGA AGGATTGAGC TTACAGTATA GAGCAAAAAT CTGTAAAAAA
TGTGATAACT GTACCAAAGA AGAATGTGAA CACGATGCTT ACGTGGTAAT AAGAAATGGA
AAACTATTAC GTGGAGTAAT CGATAAAAAC GGATTTGGTT CAGAAGCTGG AATTGTATTA
AACACCCTTG TAAAAGACTT TGGTTCAGAA GATGCAAGAT TATTCCTTGA TGCTGCAACC
AAAATGTCAA TAAAAGCAAT GGTTTTGAAA GGATTTACGA CAGGTATTGA CGATGAAGAT
ATTCCTGCTG AAGCAATTCA GGAAATTCAG GATTTATTAA ATAAAGCTGA ACAGGATGTC
GAAGATATCG TTGAAAAATA TGAAAACGGA ACTTTAGAAT CCCTCCCCGG AAGAGGTGTT
GAAGAATCCA GAGAAGCATA CATCATGCAG ATTTTGGGTA AAGCAAGAGA CCAAGCTGGT
AACGTTGCTG AAAAATATTT AAGTAAAGAA AACCACGCGG CTCTGATGGC AAGAACTGGT
GCAAGAGGTT CGCTCCTTAA CATTACGATG ATGGCTGCAA GCGTTGGTCA GCAATCAGTT
AGGGGGGGTA GGGTCTTTAG AGGTTACAGA GACAGAACCC TTCCGCACTT TGGAAAAGGA
AGTTTAGATG CAAAATCACA CGGATTCGTT AGAAGTTGCT ACAAAAAAGG ATTAGCACCA
ACAGAATACT TCTTCCACGC AATGGGTGGT AGAGAAGGTC TTGTGGATCA GGCGGTCAGG
ACTGCACAGT CTGGTTACAT GCAGAGAAGA CTCGTAAATG CTTTACAGGA TATTAGAGCA
GAATACGATG GTACTGTAAG AGATTCAAGA GGACTCGTTG TTCAGTTTGA ATACGGGGAA
GACTTGGTAG ACCCTGCAAA AGCAGACCAC GGAAAAGGTG TAGATTTAGA TAAAGTATTC
ACAAAAGTTA CTTCAAAATA TGAAAATTAA
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| Protein sequence | MDRFDVPKEI GDITFGLLSP EQIRTMSVAK IVTADTYDDD GYPIDGGLMD TRLGVIDPGL
VCKSCSGRVG TCPGHFGHIE LSKPVIHIGF AKDIYKILKA VCPHCGKVAI TELKRDEYLE
KMAKLEEDGG DPWTLCDDLL KEAAKGSVCP SCGEVKADVK YDKPTAYHQL DGKAQKQLTS
SEVREILEKI PAEDCRLLGI NAKVARPEFM VLTVLPVPPV TVRPSITLES GERSEDDLTH
KLVDIIRINQ RLEENINGGA PNLIIEDLWD LLQYHINTYF DNEAPGIPPA RHRSGRPLRT
LAQRLKGKEG RFRHNLAGKR VNFSARTVIS PDPRLSINEV GIPKLIAKEL TVPEKVTPYN
IEKVRTLLRN GADTHPGVNY VVKKVRTKDG KEEEYKIKIT DANKDMWVEN ITDGMVVERH
LSNGDIVLYN RQPSLHRMSI MAHKVKVLPY RTFRHNLCVC PPYNADFDGD EMNVHVPQSE
EARAEAENLM LVEKHIVSPR FGGPIIGGIH DFISGAYILT SSLFTKDEAL TLLNSSGLNL
DLGEPDLVEN KVEYYSGKTL FSKTLPEGLS LQYRAKICKK CDNCTKEECE HDAYVVIRNG
KLLRGVIDKN GFGSEAGIVL NTLVKDFGSE DARLFLDAAT KMSIKAMVLK GFTTGIDDED
IPAEAIQEIQ DLLNKAEQDV EDIVEKYENG TLESLPGRGV EESREAYIMQ ILGKARDQAG
NVAEKYLSKE NHAALMARTG ARGSLLNITM MAASVGQQSV RGGRVFRGYR DRTLPHFGKG
SLDAKSHGFV RSCYKKGLAP TEYFFHAMGG REGLVDQAVR TAQSGYMQRR LVNALQDIRA
EYDGTVRDSR GLVVQFEYGE DLVDPAKADH GKGVDLDKVF TKVTSKYEN
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