| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_0214 |
|---|
| Symbol | |
|---|
| ID | 4928483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | - |
|---|
| Start bp | 181610 |
|---|
| End bp | 182770 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640165713 |
|---|
| Product | DNA-directed RNA polymerase subunit A'' |
|---|
| Protein accession | YP_001096745 |
|---|
| Protein GI | 134045259 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02389] DNA-directed RNA polymerase, subunit A'' |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATGG CTGATTTAGA AAAGAAATTG GAAAATTCCG TCCTGCCACC GTTGTTAAAA
AGAGAACTTT CGGAAAAAAT TTTAAAGGAT GGACTAAGTG AAGAATACCT CGTTGACGAA
ATCATAAGCG AAACTACAAG GGCATACGAA AGAACTCTCG TAGAGCCTGG AGAAGCAGTT
GGTGTTGTTG CAGCACAATC AATTGGTGAA CCTGGTACGC AGATGACAAT GAGAACGTTC
CACTATGCAG GGGTAGCGGA GTTAAACGTT ACTCTTGGTC TTCCAAGGAT GATTGAAATT
GTAGATGCTA GAAAAGAGCC ATCTACCCCA ACAATGACAA TTTACTTAAA TGATGAATTC
AAGGGCGATA GAGAAAAAGC GTCAATGGTC GCAAAAAACA TTGAAAGTAC CAATGTTGAA
TCTGTTTCAG AAGACATCAG TGTAGATTTA GTAAATGAAT GCATTACAAT TATATTGAAC
AGCCAACAGC TTGAAAGCAG AGGATTAACT GTTCCTGATG TAATCGAAGC AATAAAATCC
AAAATGAAAC TTAAAATTGA TGATCACGAA AACGTGCTCA ACTTAAAAAT TAAAACACCT
TCATTGAAAG CATTAAGAAA GAGACTTCCA AAAGTTAGAG CAATCCACTT AAAAGGTGTG
CAAAACATCA AAAGGGTTAT TATCAGAAAA GAAGTTGATG AATACATCCT TTACAGTGAA
GGTTCAAACA TCAAAGAAGT CTTTGACATC GAAGGTGTTG ATACAACAAA AACCACTACA
AACAACATTG TTGAAATTCA GGATGTTTTA GGTATCGAAG CTGCAAGAAA TGCAATCATA
TACGAAATGG ATGCAACCCT TGGAAACCAA GGTCTTACAG TAGACAAAAG ACACTTGATG
ATGGTAGCAG ACCTTATGTG TACGGATGGA GTTGTAAAAC CAATCGGTAG ACATGGTATT
GGTGGTGAAA AAGCATCAGT TCTTGCAAGA GCAGCATTTG AAGAAACTGT AAAACACCTC
TACTCTGCAT CCATGAGAGG ATATGTTGAT GAACTCGGCG GAGTTGTTGA AAACATTATT
GTTGGAAAAC CAATTGCAAT GGGTACAGGC TGCATCGACA TATGCATCGA CAAGACTTAC
GAAGAAGGAA AAGAATTATA A
|
|---|
| Protein sequence | MQMADLEKKL ENSVLPPLLK RELSEKILKD GLSEEYLVDE IISETTRAYE RTLVEPGEAV
GVVAAQSIGE PGTQMTMRTF HYAGVAELNV TLGLPRMIEI VDARKEPSTP TMTIYLNDEF
KGDREKASMV AKNIESTNVE SVSEDISVDL VNECITIILN SQQLESRGLT VPDVIEAIKS
KMKLKIDDHE NVLNLKIKTP SLKALRKRLP KVRAIHLKGV QNIKRVIIRK EVDEYILYSE
GSNIKEVFDI EGVDTTKTTT NNIVEIQDVL GIEAARNAII YEMDATLGNQ GLTVDKRHLM
MVADLMCTDG VVKPIGRHGI GGEKASVLAR AAFEETVKHL YSASMRGYVD ELGGVVENII
VGKPIAMGTG CIDICIDKTY EEGKEL
|
|---|
| |