Gene MmarC5_0204 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmarC5_0204 
SymbolrnhB 
ID4928181 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanococcus maripaludis C5 
KingdomArchaea 
Replicon accessionNC_009135 
Strand
Start bp171898 
End bp172617 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content32% 
IMG OID640165703 
Productribonuclease HII 
Protein accessionYP_001096735 
Protein GI134045249 
COG category[L] Replication, recombination and repair 
COG ID[COG0164] Ribonuclease HII 
TIGRFAM ID[TIGR00716] ribonuclease HIII
[TIGR00729] ribonuclease H, mammalian HI/archaeal HII subfamily 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0499908 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGAGG ATATTAAAAA TAATTTAAAT AATTCAGACG AATCTAACGG CAAAATAATT 
GTTGGGCTTG ATGAAGCAGG TCGCGGACCG GTAATTGGGC CAATGGTAAT TGCTTCGGTA
AAAATTAATG AAAAAGATCT TCCCAGGTTA GATGATCTTG GATTAAGGGA CAGTAAACAA
CTTTCGAAAA AAAAGCGTGA AGAGCTTTAT ACAAAAATAA GCGAGATATG CGATGTTAAA
AAAGTTGTCA TCAATCCTGA AAAAATTGAC GAGCAGATGG AAATTATTAA CTTAAACAAG
ATTGAATTGG GCGCTTTTTC AAAACTTGCA AATCATTTTA TTAAGGAAAA CGAAAATATA
TCCATTTATA TCGATGCTTG CAGTAGCAAC GAACAGTCAT TTTCAAACCA ATTTAAAGCA
AAGCTTATTA ACAAAAACGT TGAAATCATT GCTGAACACA AAGCTGATGA AAATTACAAA
ATAGTATCTG CTGCATCAAT TATTGCCAAA GTAACTCGTG ATAATGTCAT TGAAGAATAT
AAAAAGACTT TTGGTGAAAT TGGAAGCGGA TATCCAAGTG ATCCAAAAAC GAAGAAATTT
TTGAAAAATT ACGTACACGA AAACAAGGGC CTGCCAAAAA TTGCAAGAAA AAGCTGGGCA
ACTTCAAAAA ATCTTTTAAA GGAAATAGAA GAATCTAAAA TATTTCAATG GGTGAAATAA
 
Protein sequence
MNEDIKNNLN NSDESNGKII VGLDEAGRGP VIGPMVIASV KINEKDLPRL DDLGLRDSKQ 
LSKKKREELY TKISEICDVK KVVINPEKID EQMEIINLNK IELGAFSKLA NHFIKENENI
SIYIDACSSN EQSFSNQFKA KLINKNVEII AEHKADENYK IVSAASIIAK VTRDNVIEEY
KKTFGEIGSG YPSDPKTKKF LKNYVHENKG LPKIARKSWA TSKNLLKEIE ESKIFQWVK