Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MmarC5_0204 |
Symbol | rnhB |
ID | 4928181 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanococcus maripaludis C5 |
Kingdom | Archaea |
Replicon accession | NC_009135 |
Strand | - |
Start bp | 171898 |
End bp | 172617 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 640165703 |
Product | ribonuclease HII |
Protein accession | YP_001096735 |
Protein GI | 134045249 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0164] Ribonuclease HII |
TIGRFAM ID | [TIGR00716] ribonuclease HIII [TIGR00729] ribonuclease H, mammalian HI/archaeal HII subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0499908 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGAGG ATATTAAAAA TAATTTAAAT AATTCAGACG AATCTAACGG CAAAATAATT GTTGGGCTTG ATGAAGCAGG TCGCGGACCG GTAATTGGGC CAATGGTAAT TGCTTCGGTA AAAATTAATG AAAAAGATCT TCCCAGGTTA GATGATCTTG GATTAAGGGA CAGTAAACAA CTTTCGAAAA AAAAGCGTGA AGAGCTTTAT ACAAAAATAA GCGAGATATG CGATGTTAAA AAAGTTGTCA TCAATCCTGA AAAAATTGAC GAGCAGATGG AAATTATTAA CTTAAACAAG ATTGAATTGG GCGCTTTTTC AAAACTTGCA AATCATTTTA TTAAGGAAAA CGAAAATATA TCCATTTATA TCGATGCTTG CAGTAGCAAC GAACAGTCAT TTTCAAACCA ATTTAAAGCA AAGCTTATTA ACAAAAACGT TGAAATCATT GCTGAACACA AAGCTGATGA AAATTACAAA ATAGTATCTG CTGCATCAAT TATTGCCAAA GTAACTCGTG ATAATGTCAT TGAAGAATAT AAAAAGACTT TTGGTGAAAT TGGAAGCGGA TATCCAAGTG ATCCAAAAAC GAAGAAATTT TTGAAAAATT ACGTACACGA AAACAAGGGC CTGCCAAAAA TTGCAAGAAA AAGCTGGGCA ACTTCAAAAA ATCTTTTAAA GGAAATAGAA GAATCTAAAA TATTTCAATG GGTGAAATAA
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Protein sequence | MNEDIKNNLN NSDESNGKII VGLDEAGRGP VIGPMVIASV KINEKDLPRL DDLGLRDSKQ LSKKKREELY TKISEICDVK KVVINPEKID EQMEIINLNK IELGAFSKLA NHFIKENENI SIYIDACSSN EQSFSNQFKA KLINKNVEII AEHKADENYK IVSAASIIAK VTRDNVIEEY KKTFGEIGSG YPSDPKTKKF LKNYVHENKG LPKIARKSWA TSKNLLKEIE ESKIFQWVK
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