Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MmarC5_0052 |
Symbol | secD |
ID | 4928437 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanococcus maripaludis C5 |
Kingdom | Archaea |
Replicon accession | NC_009135 |
Strand | + |
Start bp | 42274 |
End bp | 43440 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 640165550 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001096584 |
Protein GI | 134045098 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTGC TAAAAGACCC TAAAGTAATA ATTCTTTTAG TATGTATTTT GGCTTCCTTG CTACTTATTG CATTTAAGGG AATTTCCTTT GGTGTAGATT TAAGTGGTGG TTCTACAATA GTATTGCAGA CTGAAACTGA GCTTTCAGAT TCTGAAATGG TAGTTGTAAA TGAAATATTA ACAAGCAGGC TCAATACAAA CGGACTTAGT GACGTTAGGA TTTACCCAAG AGGCAGTGAC GAGATAATTA TTGAAATACC TGAAAGTGCA GATCTAGATA GAATAAAAAA AATATTAACA CAACAAGGGG TATTTATAGC AATAATTAAT AATCAAACTG CATATACTGG GCAGGAAATA TCTTATGTCG AGGAACCCGG AATAACTGCT TCGGGTTATG GGGTAGGATT TAAATTAACT CTTGATGGGG CACAAGGCTT TGCAGATGTG GCCTACGGAA AAGGAGGATA TCCTGTAGAA CTCTACATGG ATGGAAATTT GATAAGTGCT CCGATTCTTT CAGCAGATCT TGCTGATGGA AATATACACC AAAGTCAGGT AATTACTGTT GCAGGATCTT CTCCTACAGA AGAAGATATC GATGAAGCAT GGGTTATTTA CACAGCTTTA CAATCTGGTT CACTTCCTGT AAAAGTACAG ATTGAATATA TCAGCTCAGT TTCCCCTACT TTGGGATCAG AATTTATAAA AGGATCAGCA ATTGCAGGAT TTTTTGCATT CATTGCGGTT GCAGCAGTCA TTTCATTTAG GTACAAAAAT CCAAAGATAG TTCTTCCAAT TTTAATAACT GGATTTTCAG AAGTTTTGTT AATTTTGGGT TTTGCATCAC TTATTAACTG GAAACTTGAC CTTGCATCAA TTGCAGGAAT TATTGCGGCT GTGGGTACGG GTGTTGATCA CCAGATAGTT ATCACTGACG AAACAATTGC TGGTGAAGCT AAAAAAGTAA CCAAAAGTAT TAAAAGGGCG TTCTTCATTA TATTCGGTGC AGCGGCTACA ACAATTGCAG CAATGCTTCC ATTGTTTGTA ATGGGTATTG GAATGCTCAA AGGGTTTGCT ATAACCACAA TTGCAGGTGT TTTAATGGGA ATTTCAATTT CAAGACCTGC ATTTTCGAGA ATTATACAAT ATGTATTAAA GCATTAA
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Protein sequence | MKLLKDPKVI ILLVCILASL LLIAFKGISF GVDLSGGSTI VLQTETELSD SEMVVVNEIL TSRLNTNGLS DVRIYPRGSD EIIIEIPESA DLDRIKKILT QQGVFIAIIN NQTAYTGQEI SYVEEPGITA SGYGVGFKLT LDGAQGFADV AYGKGGYPVE LYMDGNLISA PILSADLADG NIHQSQVITV AGSSPTEEDI DEAWVIYTAL QSGSLPVKVQ IEYISSVSPT LGSEFIKGSA IAGFFAFIAV AAVISFRYKN PKIVLPILIT GFSEVLLILG FASLINWKLD LASIAGIIAA VGTGVDHQIV ITDETIAGEA KKVTKSIKRA FFIIFGAAAT TIAAMLPLFV MGIGMLKGFA ITTIAGVLMG ISISRPAFSR IIQYVLKH
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