| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3866 |
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| Symbol | |
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| ID | 4923990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4599900 |
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| End bp | 4601528 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640165492 |
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| Product | 60 kDa inner membrane insertion protein |
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| Protein accession | YP_001095988 |
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| Protein GI | 127514791 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000155519 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000398144 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGAATCTC AACGCAATAT ATTGCTCATC GGTCTGCTTT TTGTCAGCTT TTTGCTGTGG
CAGCAATGGC AAACAGACAA AAATCCGCAA CCGGTTGCCA CTGAATCTTC AGTTGTAGCT
TCAACCGTCA CAGATGCGCA CAGTGCTGAC GTTCCCGATG CCGACGCTGC TCTTCCAGAA
GCAGTAGCCG CCTCTAAAGA ACTCATTAGC GTCACGACAG ACCAACTGAC CCTGAAAATT
AACCCAGTGG GTGGCGATAT CGTCTACTCT GCGCTGGTGG GTCATAAACT GGAGCAAGAC
AAGGAAGAAC CTTTCGTCCT GCTGCAGCAA ACCAAAGATA TCTACTACAT CTCTCAGAGT
GGTCTGATCG GCCGTAACGG CATCGACAGC AGCACTAAGG GCCGTGCCCA CTTTAGCAGC
CAGTCACAGG CCTATACCCT AGCCGATGGC CAGGATACCC TGGAGATCCC ACTGACCTAT
GTTGCCGACA ATGGCGTGAC CTACACTAAG GTGTTCACCC TGCACAGAGG CAAGTTCGAC
GTCGGTGTTG AATATCGCAT CAACAACACC TCAGCCGAGC AGCTACAGGT GCAGATGTAT
GGTCAGATCA AGCACAGCAT CAAGAAAAGC GAAAGCAGCA TGATGATGCC GACCTATCGC
GGCGCCGCCT TCTCGACAGC AGATACCCGC TACGAGAAGT ACAGCTTCGA AGATATGGCC
GACAAGAACC TAGACAAGAA GACCCTAGGT GGTTGGGCAG CCATGCTGCA ACACTACTTC
GTATCAGCCT GGGTACCACC AGCTAACGAT CAAAACACCA TCTTCTCTAG CGTAAGCGCC
GGCGGCCTGG CCAATATCGG TTTCCGTGGT GCCGTCTATG ATGTCGCACC TGGTACACAG
CAGACTATCA GTGCCCAGTT CTACGTGGGT CCTAAGGATC AAGAGGCCCT ATCGGCCATC
TCTGAATCGC TGAATCTGGT AGTTGATTAC GGCTTCCTAT GGTGGCTGGC AATCCCAATC
CACTGGTTGT TGATGTTCTA TCAATCATTC GTGGGTAACT GGGGTGTGGC GATTATCCTA
ATTACGCTGA CCGTACGTGG TATGTTGTAC CCGCTGACTA AGGCGCAATA CACCTCTATG
GCCAAGATGC GTAACCTGCA ACCTAAACTG CAGGACATGA AAGAACGCTT CGGCGATGAC
CGTCAGAAGA TGGGTCAGGC CATGATGGAA CTGTACAAGA AAGAGAAAGT GAACCCTATG
GGTGGCTGTC TGCCTATCTT GCTACAGATG CCTATCTTCA TCGCCCTCTA CTGGGTACTG
CTGGAAAGCT ACGAGCTGCG TCACGCGCCA TTCATGCTAT GGATCACCGA CCTTTCGGTA
CAAGATCCAT ACTATGTACT GCCGCTGCTG ATGGGTGTAT CTATGTTCCT GATGCAGAAG
ATGCAGCCGA TGGCTCCGAC CATGGATCCT ATGCAACAGA AGATGATGCA GTGGATGCCA
GTTATCTTTA CCGTCTTCTT CCTCTGGTTC CCAGCGGGTC TGGTACTTTA CTGGTTGGTC
GGTAACTTGG TGGCCATCAC CCAGCAGAAG ATCATCTATG CCGGTTTGGA GAAAAAAGGG
TTAAAATAA
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| Protein sequence | MESQRNILLI GLLFVSFLLW QQWQTDKNPQ PVATESSVVA STVTDAHSAD VPDADAALPE
AVAASKELIS VTTDQLTLKI NPVGGDIVYS ALVGHKLEQD KEEPFVLLQQ TKDIYYISQS
GLIGRNGIDS STKGRAHFSS QSQAYTLADG QDTLEIPLTY VADNGVTYTK VFTLHRGKFD
VGVEYRINNT SAEQLQVQMY GQIKHSIKKS ESSMMMPTYR GAAFSTADTR YEKYSFEDMA
DKNLDKKTLG GWAAMLQHYF VSAWVPPAND QNTIFSSVSA GGLANIGFRG AVYDVAPGTQ
QTISAQFYVG PKDQEALSAI SESLNLVVDY GFLWWLAIPI HWLLMFYQSF VGNWGVAIIL
ITLTVRGMLY PLTKAQYTSM AKMRNLQPKL QDMKERFGDD RQKMGQAMME LYKKEKVNPM
GGCLPILLQM PIFIALYWVL LESYELRHAP FMLWITDLSV QDPYYVLPLL MGVSMFLMQK
MQPMAPTMDP MQQKMMQWMP VIFTVFFLWF PAGLVLYWLV GNLVAITQQK IIYAGLEKKG
LK
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