| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3844 |
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| Symbol | atpC |
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| ID | 4924248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4576150 |
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| End bp | 4576578 |
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| Gene Length | 429 bp |
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| Protein Length | 142 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640165470 |
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| Product | F0F1 ATP synthase subunit epsilon |
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| Protein accession | YP_001095966 |
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| Protein GI | 127514769 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) |
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| TIGRFAM ID | [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria) |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000154563 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCAGCCA TGACAGTACA ACTTGATATT GTAAGCGCAG AAAGCAGCAT CTTTTCGGGT
CTGGTAGCAC ACCTACAAGT CTCAGGTGCT GAGGGTGATT TAGGCGTTAT GCCGGGTCAC
GCCCCTCTGC TTACGCATAT CAAACCTGGC ATGGCGCGCA TCGTCAAACA AGATGGTAAA
GAGGAAGTGT TTTACCTTTC GGGTGGTATC CTGGAAGTGC AACCTTTCTC AGTATCAGTA
TTGGCTGACG TAGTATTGCG TGCCGAAGAG ATTGATGAGC AGGCAGCCGT AGAAGCCAAG
CGTCGTGCAG AAGCCCATAT GGCTAACGCT GGCGCAGACT TTAACTATGC CGCTGCAGCG
ATTGAATTAG CTCAGGCTAT CGCTCAATTG CGCGTTGTAG AGACCATCAA GAAGAACATT
GCCAGATAA
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| Protein sequence | MAAMTVQLDI VSAESSIFSG LVAHLQVSGA EGDLGVMPGH APLLTHIKPG MARIVKQDGK
EEVFYLSGGI LEVQPFSVSV LADVVLRAEE IDEQAAVEAK RRAEAHMANA GADFNYAAAA
IELAQAIAQL RVVETIKKNI AR
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