| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3838 |
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| Symbol | |
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| ID | 4924242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4566687 |
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| End bp | 4567667 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640165464 |
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| Product | transposase, IS4 family protein |
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| Protein accession | YP_001095960 |
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| Protein GI | 127514763 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3039] Transposase and inactivated derivatives, IS5 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000231978 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCAAC AACTAACCTT TGCCGATAGT GAGTTTTCTA GCAAGCGTCG TCAGACTCGC
AAAGAGATTT TTTTATCCCG GATGGAGAAC CTGTTGCCGT GGTCTCAACT GCTGGACGTG
ATTGAACCCT TTTACCCCAA AGTCGGCAAC GGTCGCCGTC CTTATCCACT TGAGACAATG
TTCCGCATTC ATTGTATGCA GCAATGGTAC AGTCTTAGTG ACGAAGCGAC CGAAGATGCG
TTATACGAAA TTGCTTCAAT GCGTCAGTTT GCACTATTGT CACTCGATAA AGCGATCCCA
GACCGTACCA CCATCATGAA CTTTAGGCAC TTGCTGGAAA AGCATAAACT CACACGAAAA
TTATTCAAAA CTGTTAATCA ATGGCTGTCG GATAGTGGTG TGATGATGAC ACAAGGTACG
TTGGTGGATG CTACGATTAT TGAAGCACCG AGCTCCACTA AGAATAAAAA CAATGAGCGA
GACCCAGATA TGCATCAGAC CAAGAAAGGC AACCAATGGC ACTTCGGCAT GAAAGCCTAC
ATTGGTGTGG ATGCCAAGAG CGGTCTCACC CATACGCTGG TTACCACAGC TGCCAACGAA
CATGATCTGA ACCAATTAGA TAATTTGCTT CACGGTGAAG AGGAATTCGT TTCCGGCGAT
GCCGGTTATC AAGGCGCACA GAAACGGGAA GAATTGAAAG ACACGAACGT GGAATGGCTG
ATTGCCGAGC GCCCCGGTAA AATCCGGGCA CTGAAAAAGC GCCCACGCAA GAACAAGACA
ATAATCAACA TCGAATACTT AAAAGCCAGC ATCCGAGCAA AGGTAGAACA CCCGTTTCGC
ATTATCAAAT GTCAGTTCGG CTTCATCAAA GCACGCTACA AGGGGCTGAT GAAAAATGAC
TCACAGTTAG CCATGTTATT CACTTTGGCA AACCTGTTTA CAGTAGACCA AATGTTGCGA
CGACAACCAA GATCTGTCTG A
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| Protein sequence | MSQQLTFADS EFSSKRRQTR KEIFLSRMEN LLPWSQLLDV IEPFYPKVGN GRRPYPLETM
FRIHCMQQWY SLSDEATEDA LYEIASMRQF ALLSLDKAIP DRTTIMNFRH LLEKHKLTRK
LFKTVNQWLS DSGVMMTQGT LVDATIIEAP SSTKNKNNER DPDMHQTKKG NQWHFGMKAY
IGVDAKSGLT HTLVTTAANE HDLNQLDNLL HGEEEFVSGD AGYQGAQKRE ELKDTNVEWL
IAERPGKIRA LKKRPRKNKT IINIEYLKAS IRAKVEHPFR IIKCQFGFIK ARYKGLMKND
SQLAMLFTLA NLFTVDQMLR RQPRSV
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