| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3818 |
|---|
| Symbol | |
|---|
| ID | 4922823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 4545112 |
|---|
| End bp | 4547355 |
|---|
| Gene Length | 2244 bp |
|---|
| Protein Length | 747 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640165447 |
|---|
| Product | copper-translocating P-type ATPase |
|---|
| Protein accession | YP_001095943 |
|---|
| Protein GI | 127514746 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.585028 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0148083 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCA ACAGAGTACA ACTCAATATC ATAGGCGCCG GCTGTGCCAG CTGCGTCGGT
AAGATAGAGA AGGCATTAAA TTCTGTCCCC GGTGTCGACT CGGCCGAGAT GAACTTTGCC
GAGCGCATCG TCGAAGTATC TGGAACGGCA ACGCCGCAGC AGCTAATTGC GGCCGTCGAG
GCGGCGGGTT ATAACGCGAC CCAGCTGCAG GCCGAGGCGG GTAATGATGC CATGGATGAG
AAGGAGCAGG CGGATCTCGA CTATTACCGT AGCCTGCTGC GCCATACCTT TATTGCCTTG
TCTGTGGGTA TTCCCTTGAT GATCTATGGT CTGTTTATCG GCGAGATGAC GGTAACGACC
ACGAACGAGC AATTAGCCTG GGGGCTGGTG GGCTTGGTGA CCCTGAGCAT CATGCTCCTG
TCTGGTAAAC ACTTCTATGT GGGGGCGTGG AAATCCTTTG TGCACCACAA CGCCAACATG
GACACGCTAA TCGCCTTAGG CACAGGCACA GCCTGGCTCT ATTCTATGCT GGTGGTCGCC
TTTCCAACCC TGCTGCCCGA GATGGCACGT CACGTCTATT TTGAGGCCAC GGCGATGATC
ATAGGTTTGA TCAACTTAGG TTTAGCGCTG GAAGTAAAGG CCAGGGGCAA GACCTCGGAG
GCAATCAAGC GTTTGATCGG TTTACAGGCC AAGACGGCGC GGGTGATACG CGACGGCAAG
GAGCTGGATA TCGACATCGC TCAGGTGCTG CAAGGCGATA AGGTACGGGT GCGCCCCGGC
GAGAAGATCC CCGTCGATGG TGTGGTCATC GAGGGCGCCA CCATGGTGGA TGAGTCTATG
CTGACCGGCG AACCTATGCC GGTTGAGAAG GCTATCGACA GCGAAGTTGT CACGGGGACC
CTAAACAAGT CTGGCTCCAT CGTCTTTAGC GCGACCCGAG TGGGTAAAGA CACTGCCCTG
GCCAGAATCA TCGCCATGGT GAAGCGGGCG CAGAACTCTA AGCCGCCAAT CGGTCGGCTT
GCCGATGTAA TTGCCAGCTA TTTCGTTCCT GCCATCATGA TCATCGCCAT CGTTAGCGCC
ATGGTGTGGT TTAACTTCGG CCCCGAGCCT TCCATGGTGT TTGCCATCGT CTCGGCCACG
ACTGTGTTGA TCATCGCCTG TCCCTGTGCC CTGGGGTTGG CTACGCCTAT GTCTGTCATG
GTGGGTGTGG GCAAGGCGGC CGAATCTGGG GTGCTGATCC GTAACGGCGA GGCACTACAA
ACCGCCTCTA AGATCAGTGT CATGGTACTG GATAAGACGG GCACTATTAC TCAGGGCTCA
CCTCAGGTTA CAGATGTGGT GGTGACTCAG GTGTCTTCCT GTGGCGAGGA CGAGGTATTG
GCCCTGGCGG CCGGTATCGA GCGACACTCT GAGCATCCCC TGGCCGAGGC GATTGTCGAG
ACGGCTAACA GCCGCGGCAT ACAGATGGAG GCTGTCGAGG ACTTTAATGC CATCTCCGGG
CGCGGAGTCG AGGCCAAATT GAATGGGCAG ACGCTGCTGT TTGGTAATCA GGCGCTCATG
CAGGACTTCG GCGTGGATAC CCAGGCCTAT CAGGCCAAGG CGCAGCAGCT GGCGGCGGAG
GCCAAGACGC CCATGTATCT GGCGCAGGAA AATGAGCTTA TTGCCATCAT AGCGGTGGCA
GACCCTATCA AGCCTGACTC GGCCGAGGCG ATCGCCCGGC TCAAGCACAG TGGCATCAAG
GTGGTGATGT TAACCGGAGA TAATCAGGCC ACGGCCGCGG CGGTGGCGGC TAAGGTTGGC
ATAGAGACGT TTTTTGCCGA GGTGATGCCC CAGGATAAGG CCAGTAAGGT CGCCGAGCTG
CAGCAAGAGG GTGAGGTAGT GGGCATGACG GGGGATGGTA TCAACGATGC CCCGGCACTG
GCATTGGCTA ATGTGGGCTT TGCCATAGGT ACGGGTACGG ATGTGGCCAT TGAGAGTGCC
GACATCACCC TGATGCGAGG CTCCTTGCAC GGCTTGGCCG ATGCGATTGC GGTCAGCAAG
GCGACGCTGA GAAATATCAA ACAGAATCTG TTTGGCGCCT TCGTCTATAA CGCCGCCGGT
ATTCCCATTG CCGCCGGGAT CCTCTACCCC ATGTTTGGCT TACTGCTCAA TCCTGTGATT
GCCGGTGCGG CCATGGCCTT CTCATCGCTA ACCGTGGTGA GCAACGCCAA TCGTCTGCGT
CTGTTTAAAG CCAAAGCGCA TTAG
|
|---|
| Protein sequence | MDTNRVQLNI IGAGCASCVG KIEKALNSVP GVDSAEMNFA ERIVEVSGTA TPQQLIAAVE
AAGYNATQLQ AEAGNDAMDE KEQADLDYYR SLLRHTFIAL SVGIPLMIYG LFIGEMTVTT
TNEQLAWGLV GLVTLSIMLL SGKHFYVGAW KSFVHHNANM DTLIALGTGT AWLYSMLVVA
FPTLLPEMAR HVYFEATAMI IGLINLGLAL EVKARGKTSE AIKRLIGLQA KTARVIRDGK
ELDIDIAQVL QGDKVRVRPG EKIPVDGVVI EGATMVDESM LTGEPMPVEK AIDSEVVTGT
LNKSGSIVFS ATRVGKDTAL ARIIAMVKRA QNSKPPIGRL ADVIASYFVP AIMIIAIVSA
MVWFNFGPEP SMVFAIVSAT TVLIIACPCA LGLATPMSVM VGVGKAAESG VLIRNGEALQ
TASKISVMVL DKTGTITQGS PQVTDVVVTQ VSSCGEDEVL ALAAGIERHS EHPLAEAIVE
TANSRGIQME AVEDFNAISG RGVEAKLNGQ TLLFGNQALM QDFGVDTQAY QAKAQQLAAE
AKTPMYLAQE NELIAIIAVA DPIKPDSAEA IARLKHSGIK VVMLTGDNQA TAAAVAAKVG
IETFFAEVMP QDKASKVAEL QQEGEVVGMT GDGINDAPAL ALANVGFAIG TGTDVAIESA
DITLMRGSLH GLADAIAVSK ATLRNIKQNL FGAFVYNAAG IPIAAGILYP MFGLLLNPVI
AGAAMAFSSL TVVSNANRLR LFKAKAH
|
|---|
| |