Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3789 |
Symbol | |
ID | 4924180 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4508699 |
End bp | 4509661 |
Gene Length | 963 bp |
Protein Length | 320 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640165415 |
Product | ABC-type nitrate/sulfonate/bicarbonate transport system protein |
Protein accession | YP_001095914 |
Protein GI | 127514717 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAAGG GAATCATTTC TGGACTATTG CTGTCGCTAC TCGCCCTATT TCTGCTCGGC TGCGGGCCGA AGAAGGTCGA AGAACCTATT ACCATCGCCA TGAACCCCTG GCCCGGCTAC GAACTCCTCT ATCTGGCCAA GCAGAAGGGG TTCTTTCAGC AGGTGGGCGC CAATATCGAG CTGGTGCAGG TGTCGACCCT CTCCGATGCC CAGCGCGCCT ACTTAACCGG CTATGTGGAT GGCTTCGCCA GTACCATGAT AGAGGCGATT CAGGTGGCAC CTCTGGGGGG CAAGCCGATT AAGATCGTCT TGCTGGCGGA CTACTCTGAC GGTGGCGACG TGATTATCGC GCCCGACGCG TTCGAGAATA TGCAGGCGCT TAGGGGCGAG ACCATAGGCT GCGAGGTCAG CTCCTTAGGG ATCTTCGTGC TGGAGCGGGC CCTCAGACAG CACAAGATGA ACATAGACGA CGTGAAGGTG ATCAATGTGG AGCAGGGGGC GGCGGCGAGC GCTCTGGCCA TAGGCAAGAT TGCCGCCATG GTGACCTATC CGCCCTATTC GGTGGAGATA CAATCCAGCG GCGCCTATCG TCAGCTGTTC TCCACCAAGG AGATCCCAGA GGAGGTGTTA GATACCCTGT CTATCTCCTC CAGCGTCCTG GCCGAGCATC CACAACTGGT GGAGCAGATC CGCCGGGCCT GGCAGCTGGC GATGGACTAT ATGCAGCAGG ATCCCGAGGA GGCGATGGCC ATCATGGCCA AGCGTGAAGG GCTTCAGGTA GCCGACTTCA AGGGCGCGCT GGCGGATCTC AAGCTGCTGA GTGGCGAGGA TCAACGCAAG CTGTTTGCCC AGAACGACAA GCTGATTCAG CTGGGCTACA GCGTCTGTGA GACCCTGGTC AAGATAGAGG CGATCGAGTC CGATTGCCGT CATGTCGACA ACCTCTTCTA TCGGGCGCCT TAG
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Protein sequence | MIKGIISGLL LSLLALFLLG CGPKKVEEPI TIAMNPWPGY ELLYLAKQKG FFQQVGANIE LVQVSTLSDA QRAYLTGYVD GFASTMIEAI QVAPLGGKPI KIVLLADYSD GGDVIIAPDA FENMQALRGE TIGCEVSSLG IFVLERALRQ HKMNIDDVKV INVEQGAAAS ALAIGKIAAM VTYPPYSVEI QSSGAYRQLF STKEIPEEVL DTLSISSSVL AEHPQLVEQI RRAWQLAMDY MQQDPEEAMA IMAKREGLQV ADFKGALADL KLLSGEDQRK LFAQNDKLIQ LGYSVCETLV KIEAIESDCR HVDNLFYRAP
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