Gene Shew_3789 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3789 
Symbol 
ID4924180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp4508699 
End bp4509661 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content58% 
IMG OID640165415 
ProductABC-type nitrate/sulfonate/bicarbonate transport system protein 
Protein accessionYP_001095914 
Protein GI127514717 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAAGG GAATCATTTC TGGACTATTG CTGTCGCTAC TCGCCCTATT TCTGCTCGGC 
TGCGGGCCGA AGAAGGTCGA AGAACCTATT ACCATCGCCA TGAACCCCTG GCCCGGCTAC
GAACTCCTCT ATCTGGCCAA GCAGAAGGGG TTCTTTCAGC AGGTGGGCGC CAATATCGAG
CTGGTGCAGG TGTCGACCCT CTCCGATGCC CAGCGCGCCT ACTTAACCGG CTATGTGGAT
GGCTTCGCCA GTACCATGAT AGAGGCGATT CAGGTGGCAC CTCTGGGGGG CAAGCCGATT
AAGATCGTCT TGCTGGCGGA CTACTCTGAC GGTGGCGACG TGATTATCGC GCCCGACGCG
TTCGAGAATA TGCAGGCGCT TAGGGGCGAG ACCATAGGCT GCGAGGTCAG CTCCTTAGGG
ATCTTCGTGC TGGAGCGGGC CCTCAGACAG CACAAGATGA ACATAGACGA CGTGAAGGTG
ATCAATGTGG AGCAGGGGGC GGCGGCGAGC GCTCTGGCCA TAGGCAAGAT TGCCGCCATG
GTGACCTATC CGCCCTATTC GGTGGAGATA CAATCCAGCG GCGCCTATCG TCAGCTGTTC
TCCACCAAGG AGATCCCAGA GGAGGTGTTA GATACCCTGT CTATCTCCTC CAGCGTCCTG
GCCGAGCATC CACAACTGGT GGAGCAGATC CGCCGGGCCT GGCAGCTGGC GATGGACTAT
ATGCAGCAGG ATCCCGAGGA GGCGATGGCC ATCATGGCCA AGCGTGAAGG GCTTCAGGTA
GCCGACTTCA AGGGCGCGCT GGCGGATCTC AAGCTGCTGA GTGGCGAGGA TCAACGCAAG
CTGTTTGCCC AGAACGACAA GCTGATTCAG CTGGGCTACA GCGTCTGTGA GACCCTGGTC
AAGATAGAGG CGATCGAGTC CGATTGCCGT CATGTCGACA ACCTCTTCTA TCGGGCGCCT
TAG
 
Protein sequence
MIKGIISGLL LSLLALFLLG CGPKKVEEPI TIAMNPWPGY ELLYLAKQKG FFQQVGANIE 
LVQVSTLSDA QRAYLTGYVD GFASTMIEAI QVAPLGGKPI KIVLLADYSD GGDVIIAPDA
FENMQALRGE TIGCEVSSLG IFVLERALRQ HKMNIDDVKV INVEQGAAAS ALAIGKIAAM
VTYPPYSVEI QSSGAYRQLF STKEIPEEVL DTLSISSSVL AEHPQLVEQI RRAWQLAMDY
MQQDPEEAMA IMAKREGLQV ADFKGALADL KLLSGEDQRK LFAQNDKLIQ LGYSVCETLV
KIEAIESDCR HVDNLFYRAP